Parental gene:

Ndufaf4, ENSRNOG00000007506

Aliases:Ndufaf4, Hrpap20
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9NQR8]
Organism:Rat (Rattus norvegicus)
Coordinates:5:43880678..43885850(+)


>ENSRNOG00000007506
ATGGGGGCTCGCATGACCCGCGCCTTCAGGAACTTCAACGTGGAGAAGCGAGCGGAGCAGGAGATCAGCAAGAGGAAGCC
CTCCATGGCACCCAAGCACCCTTCCACCCGCAGTCTCCTGCAGGAGCACCTGAGTCAGTATCCAGAAATCGAGGAAGAAG
TTTCTAGAAAAGATAACAAGCTGCTGTCCTTACTAAGAGATGTATATGTCAATTCCAAAGATCCGGTGCCTTCCTTGCCG
GTAAAAGCCATTGAACCACAGCAACAACCAAAGGAGTTCAGATTGCCGATAGGAGATCAATTTGACAAGAATATCAAGGA
CATTCCCAAAGGCAAGATCACTGTTGTAGAAGCACTGACCCTTCTCAATAACCATAAACTCTCTCCAGAGACATGGACTG
CTGAGAAAATCGCCCAGGAATACCATTTAGAACTGGAGGATGTAAATTCCCTTCTCAAATATTTCGTTACTTTTGAAGTC
AAAATCGTTCCTCCTGAAGACAGGAAAGCAATACAATCAAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 26 .67 RPM
SRP017611_kidney 36 .01 RPM
SRP017611_liver 12 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003174 ortholog_one2many 1 retrogene
retro_btau_1763,
Choloepus hoffmanni ENSCHOG00000005145 ortholog_one2many 2 retrogenes
retro_chof_2271, retro_chof_891,
Callithrix jacchus ENSCJAG00000001235 ortholog_many2many 2 retrogenes
retro_cjac_1613, retro_cjac_1700,
Cavia porcellus ENSCPOG00000007618 ortholog_one2many 1 retrogene
retro_cpor_425,
Homo sapiens ENSG00000123545 ortholog_one2many 4 retrogenes
retro_hsap_1494, retro_hsap_2774, retro_hsap_3761, retro_hsap_477,
Gorilla gorilla ENSGGOG00000012070 ortholog_one2many 4 retrogenes
retro_ggor_1147, retro_ggor_1931, retro_ggor_2529, retro_ggor_451,
Microcebus murinus ENSMICG00000015734 ortholog_one2many 1 retrogene
retro_mmur_1624,
Macaca mulatta ENSMMUG00000018843 ortholog_one2many 4 retrogenes
retro_mmul_1717, retro_mmul_2138, retro_mmul_578, retro_mmul_734,
Mus musculus ENSMUSG00000028261 ortholog_one2many 3 retrogenes
retro_mmus_1153, retro_mmus_1290, retro_mmus_3668,
Nomascus leucogenys ENSNLEG00000013568 ortholog_one2many 4 retrogenes
retro_nleu_171, retro_nleu_1716, retro_nleu_678, retro_nleu_890,
Oryctolagus cuniculus ENSOCUG00000002152 ortholog_one2many 1 retrogene
retro_ocun_1162,
Pongo abelii ENSPPYG00000016857 ortholog_one2many 4 retrogenes
retro_pabe_1244, retro_pabe_2241, retro_pabe_257, retro_pabe_3160,
Pan troglodytes ENSPTRG00000018435 ortholog_one2many 4 retrogenes
retro_ptro_1013, retro_ptro_1877, retro_ptro_2552, retro_ptro_358,
Tursiops truncatus ENSTTRG00000010911 ortholog_one2many 1 retrogene
retro_ttru_628,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_675 74.07 92.53
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2. retro_rnor_1617 88.64 100.00
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3. retro_rnor_2973 88.14 100.00
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Download FASTA sequences of all ENSRNOG00000007506 retrocopies