Parental gene:

Rpl7, ENSRNOG00000006992

Aliases:None
Description:60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004]
Organism:Rat (Rattus norvegicus)
Coordinates:5:2621854..2624860(+)


>ENSRNOG00000006992
ATGGAGGCTGTACCAGAGAAGAAAAAGAAGGTTGCCGCTGCGCCAGGAACCCTTAAGAAGAAAAAGGTTCCTGCGGTGCC
AGAAACCCTTAAGAAAAAGCGAAGGAATTTCGCAGAGTTGAAGGTCAAGCGCCTGAGGAAGAAGTTTGCCCTGAAGACAC
TGCGAAAGGCAAGGAGGAAGCTCATCTATGAGAAGGCAAAGCACTATCACAAGGAGTACAGACAGATGTACCGGACTGAG
ATTCGCATGGCTAGGATGGCGAGGAAAGCTGGCAACTTCTATGTGCCCGCAGAACCAAAATTGGCCTTTGTCATCAGAAT
CCGAGGTATCAATGGAGTGAGCCCAAAGGTGCGCAAGGTGCTGCAGCTGCTCCGTCTCCGGCAGATCTTCAATGGCACCT
TTGTGAAGCTCAACAAGGCTTCAGTGAACATGCTGAGGATCGTGGAGCCCTACATTGCATGGGGGTACCCCAACCTGAAG
TCAGTAAACGAGCTCATCTACAAACGAGGCTATGGCAAAATCAATAAAAAGCGCATTGCCTTGACAGATAACTCCTTGGT
TGCTCGATCTCTTGGTAAATTTGGCATCATCTGCATGGAGGATCTAATTCATGAGATCTATACAGTTGGAAAACGCTTTA
AGGAAGCAAATAACTTCCTGTGGCCCTTCAAACTGTCTTCCCCACGAGGTGGAATGAAGAAAAAGACAACTCACTTTGTA
GAAGGTGGAGACGCTGGCAACAGGGAAGACCAGATAAACAGGCTTATTAGACGGATGAACTAA

Library Parental gene expression (RPM)
SRP017611_brain 134 .59 RPM
SRP017611_kidney 304 .39 RPM
SRP017611_liver 183 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020139 possible_ortholog 22 retrogenes
retro_btau_1088, retro_btau_1231, retro_btau_1367, retro_btau_1381, retro_btau_1422, retro_btau_1434, retro_btau_1468, retro_btau_1548, retro_btau_1559, retro_btau_1616, retro_btau_1627, retro_btau_1784, retro_btau_1814, retro_btau_304, retro_btau_426, retro_btau_622, retro_btau_668, retro_btau_730, retro_btau_750, retro_btau_758, retro_btau_863, retro_btau_879,
Callithrix jacchus ENSCJAG00000007686 possible_ortholog 1 retrogene
retro_cjac_105,
Equus caballus ENSECAG00000009188 ortholog_many2many 1 retrogene
retro_ecab_35,
Homo sapiens ENSG00000147604 possible_ortholog 49 retrogenes
retro_hsap_1001, retro_hsap_1023, retro_hsap_1033, retro_hsap_1034, retro_hsap_1128, retro_hsap_113, retro_hsap_1232, retro_hsap_1281, retro_hsap_1614, retro_hsap_1626, retro_hsap_1844, retro_hsap_1862, retro_hsap_1957, retro_hsap_2008, retro_hsap_203, retro_hsap_2093, retro_hsap_2101, retro_hsap_2588, retro_hsap_2837, retro_hsap_3197, retro_hsap_3204, retro_hsap_3244, retro_hsap_3254, retro_hsap_3356, retro_hsap_3399, retro_hsap_344, retro_hsap_3453, retro_hsap_3493, retro_hsap_3560, retro_hsap_3573, retro_hsap_3625, retro_hsap_3717, retro_hsap_3775, retro_hsap_3883, retro_hsap_3918, retro_hsap_4137, retro_hsap_415, retro_hsap_426, retro_hsap_4306, retro_hsap_4662, retro_hsap_4704, retro_hsap_4718, retro_hsap_4761, retro_hsap_558, retro_hsap_616, retro_hsap_708, retro_hsap_729, retro_hsap_973, retro_hsap_976,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Microcebus murinus ENSMICG00000002880 possible_ortholog 8 retrogenes
retro_mmur_1170, retro_mmur_1379, retro_mmur_139, retro_mmur_158, retro_mmur_52, retro_mmur_596, retro_mmur_646, retro_mmur_903,
Myotis lucifugus ENSMLUG00000028550 possible_ortholog 3 retrogenes
retro_mluc_1478, retro_mluc_2000, retro_mluc_640,
Macaca mulatta ENSMMUG00000005141 possible_ortholog 1 retrogene
retro_mmul_129,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Mus musculus ENSMUSG00000043716 ortholog_one2many 15 retrogenes
retro_mmus_1232, retro_mmus_1345, retro_mmus_1631, retro_mmus_2549, retro_mmus_2562, retro_mmus_2798, retro_mmus_3259, retro_mmus_3305, retro_mmus_3440, retro_mmus_3547, retro_mmus_3552, retro_mmus_3685, retro_mmus_561, retro_mmus_595, retro_mmus_708,
Otolemur garnettii ENSOGAG00000003903 possible_ortholog 2 retrogenes
retro_ogar_15, retro_ogar_225,
Pongo abelii ENSPPYG00000018671 possible_ortholog 50 retrogenes
retro_pabe_1025, retro_pabe_1061, retro_pabe_1087, retro_pabe_1326, retro_pabe_1454, retro_pabe_1520, retro_pabe_1642, retro_pabe_1677, retro_pabe_1908, retro_pabe_1998, retro_pabe_2004, retro_pabe_2118, retro_pabe_2197, retro_pabe_2348, retro_pabe_2656, retro_pabe_2690, retro_pabe_2762, retro_pabe_2796, retro_pabe_2807, retro_pabe_2808, retro_pabe_2856, retro_pabe_2886, retro_pabe_2936, retro_pabe_2946, retro_pabe_307, retro_pabe_3085, retro_pabe_3117, retro_pabe_3139, retro_pabe_3191, retro_pabe_3414, retro_pabe_3468, retro_pabe_3506, retro_pabe_352, retro_pabe_3622, retro_pabe_3651, retro_pabe_3662, retro_pabe_3669, retro_pabe_3675, retro_pabe_436, retro_pabe_497, retro_pabe_514, retro_pabe_551, retro_pabe_628, retro_pabe_655, retro_pabe_826, retro_pabe_844, retro_pabe_859, retro_pabe_865, retro_pabe_867, retro_pabe_933,
Rattus norvegicus ENSRNOG00000016269 within_species_paralog 1 retrogene
retro_rnor_2795,
Ictidomys tridecemlineatus ENSSTOG00000004586 possible_ortholog 18 retrogenes
retro_itri_1025, retro_itri_1080, retro_itri_1358, retro_itri_1375, retro_itri_1412, retro_itri_1430, retro_itri_1464, retro_itri_1593, retro_itri_1776, retro_itri_271, retro_itri_346, retro_itri_349, retro_itri_351, retro_itri_390, retro_itri_534, retro_itri_542, retro_itri_827, retro_itri_917,
Tupaia belangeri ENSTBEG00000002301 ortholog_many2many 1 retrogene
retro_tbel_2042,
Tarsius syrichta ENSTSYG00000006100 ortholog_one2many 25 retrogenes
retro_tsyr_1149, retro_tsyr_1200, retro_tsyr_1293, retro_tsyr_1297, retro_tsyr_1403, retro_tsyr_1598, retro_tsyr_1633, retro_tsyr_1850, retro_tsyr_1891, retro_tsyr_191, retro_tsyr_2109, retro_tsyr_2130, retro_tsyr_344, retro_tsyr_421, retro_tsyr_433, retro_tsyr_521, retro_tsyr_589, retro_tsyr_601, retro_tsyr_651, retro_tsyr_724, retro_tsyr_779, retro_tsyr_877, retro_tsyr_930, retro_tsyr_953, retro_tsyr_992,
Tursiops truncatus ENSTTRG00000009074 possible_ortholog 16 retrogenes
retro_ttru_1241, retro_ttru_1546, retro_ttru_1690, retro_ttru_174, retro_ttru_1776, retro_ttru_1918, retro_ttru_210, retro_ttru_290, retro_ttru_367, retro_ttru_402, retro_ttru_534, retro_ttru_604, retro_ttru_726, retro_ttru_852, retro_ttru_933, retro_ttru_952,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_530 82.51 100.00
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2. retro_rnor_666 83.95 93.08
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3. retro_rnor_911 81.74 83.08
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4. retro_rnor_929 69.63 81.92
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5. retro_rnor_977 82.35 71.92
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6. retro_rnor_1018 82.43 91.92
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7. retro_rnor_1174 81.92 99.23
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8. retro_rnor_1222 96.90 86.54
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9. retro_rnor_1233 75.92 93.85
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10. retro_rnor_1307 79.33 78.85
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11. retro_rnor_1388 64.66 51.15
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12. retro_rnor_1466 77.46 52.69
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13. retro_rnor_1580 86.31 64.23
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14. retro_rnor_1745 74.72 67.69
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15. retro_rnor_1916 80.61 100.00
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16. retro_rnor_1944 91.67 87.31
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17. retro_rnor_2025 72.14 99.62
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18. retro_rnor_2028 86.78 86.54
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19. retro_rnor_2100 67.13 82.31
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20. retro_rnor_2247 74.06 80.77
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21. retro_rnor_2304 77.08 55.00
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22. retro_rnor_2347 92.31 70.00
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23. retro_rnor_2531 85.06 91.92
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24. retro_rnor_2715 91.27 87.31
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25. retro_rnor_2765 85.83 92.31
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26. retro_rnor_2814 84.77 92.31
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27. retro_rnor_2824 89.31 60.77
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Download FASTA sequences of all ENSRNOG00000006992 retrocopies