RetrogeneDB - Parental gene ENSBTAG00000020139 details

                            
>ENSBTAG00000020139
ATGGAGGGTGCAGAAGAGAAGAAAAAGAAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGGAAGAATTTCGCAGA

GCTTAAGATCAAGCGACTGAGAAAGAAGTTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAG

CTAAGCATTACCACAAGGAATACAGGCAGATGTACAGAACTGAAATTCGAATGGCTAGGATGGCACGAAAAGCCGGTAAC

TTCTATGTACCCGCGGAACCCAAATTGGCGTTTGTCATCAGGATCAGAGGTATCAATGGTGTGAGCCCAAAGGTTCGAAA

GGTGCTGCAGCTCCTTCGCCTCCGGCAGATCTTCAACGGCACCTTTGTGAAGCTCAACAAGGCGTCAATTAACATGCTGA

GAATTGTGGAGCCATACATTGCATGGGGGTACCCAAATCTGAAGTCTGTAAATGAATTGATTTACAAGCGTGGTTACGGC

AAAATCAACAAAAAGCGAATTGCCCTGACAGACAACGCATTGATTGCTCGATCTCTTGGGAAATATGGAATCATCTGCAT

GGAGGATCTGATTCATGAGATCTATACCGTTGGAAAACGTTTCAAAGAAGCAAACAACTTCCTGTGGCCCTTTAAATTGT

CTTCTCCACGAGGTGGAATGAAGAAAAAGACCACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAGGGAAGACCAGATC

AACAGGCTTATTAGAAGGATGAACTAA

Library	Parental gene expression (RPM)
ERP005899_liver	178 .37 RPM
ERP005899_muscle	1258 .39 RPM
SRP017611_brain	104 .47 RPM
SRP017611_kidney	269 .03 RPM
SRP017611_liver	138 .03 RPM
SRP030211_testis	222 .08 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000018478	within_species_paralog	2 retrogenes	retro_btau_588, retro_btau_816,
Callithrix jacchus	ENSCJAG00000007686	ortholog_many2many	1 retrogene	retro_cjac_105,
Equus caballus	ENSECAG00000009188	possible_ortholog	1 retrogene	retro_ecab_35,
Homo sapiens	ENSG00000147604	ortholog_one2many	49 retrogenes	retro_hsap_1001, retro_hsap_1023, retro_hsap_1033, retro_hsap_1034, retro_hsap_1128, retro_hsap_113, retro_hsap_1232, retro_hsap_1281, retro_hsap_1614, retro_hsap_1626, retro_hsap_1844, retro_hsap_1862, retro_hsap_1957, retro_hsap_2008, retro_hsap_203, retro_hsap_2093, retro_hsap_2101, retro_hsap_2588, retro_hsap_2837, retro_hsap_3197, retro_hsap_3204, retro_hsap_3244, retro_hsap_3254, retro_hsap_3356, retro_hsap_3399, retro_hsap_344, retro_hsap_3453, retro_hsap_3493, retro_hsap_3560, retro_hsap_3573, retro_hsap_3625, retro_hsap_3717, retro_hsap_3775, retro_hsap_3883, retro_hsap_3918, retro_hsap_4137, retro_hsap_415, retro_hsap_426, retro_hsap_4306, retro_hsap_4662, retro_hsap_4704, retro_hsap_4718, retro_hsap_4761, retro_hsap_558, retro_hsap_616, retro_hsap_708, retro_hsap_729, retro_hsap_973, retro_hsap_976,
Latimeria chalumnae	ENSLACG00000003571	ortholog_one2many	1 retrogene	retro_lcha_63,
Macropus eugenii	ENSMEUG00000016319	ortholog_many2many	9 retrogenes	retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Microcebus murinus	ENSMICG00000002880	ortholog_one2many	8 retrogenes	retro_mmur_1170, retro_mmur_1379, retro_mmur_139, retro_mmur_158, retro_mmur_52, retro_mmur_596, retro_mmur_646, retro_mmur_903,
Myotis lucifugus	ENSMLUG00000028550	possible_ortholog	3 retrogenes	retro_mluc_1478, retro_mluc_2000, retro_mluc_640,
Macaca mulatta	ENSMMUG00000005141	ortholog_many2many	1 retrogene	retro_mmul_129,
Monodelphis domestica	ENSMODG00000007136	ortholog_many2many	4 retrogenes	retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Mus musculus	ENSMUSG00000043716	possible_ortholog	15 retrogenes	retro_mmus_1232, retro_mmus_1345, retro_mmus_1631, retro_mmus_2549, retro_mmus_2562, retro_mmus_2798, retro_mmus_3259, retro_mmus_3305, retro_mmus_3440, retro_mmus_3547, retro_mmus_3552, retro_mmus_3685, retro_mmus_561, retro_mmus_595, retro_mmus_708,
Otolemur garnettii	ENSOGAG00000003903	ortholog_many2many	2 retrogenes	retro_ogar_15, retro_ogar_225,
Pongo abelii	ENSPPYG00000018671	ortholog_one2many	50 retrogenes	retro_pabe_1025, retro_pabe_1061, retro_pabe_1087, retro_pabe_1326, retro_pabe_1454, retro_pabe_1520, retro_pabe_1642, retro_pabe_1677, retro_pabe_1908, retro_pabe_1998, retro_pabe_2004, retro_pabe_2118, retro_pabe_2197, retro_pabe_2348, retro_pabe_2656, retro_pabe_2690, retro_pabe_2762, retro_pabe_2796, retro_pabe_2807, retro_pabe_2808, retro_pabe_2856, retro_pabe_2886, retro_pabe_2936, retro_pabe_2946, retro_pabe_307, retro_pabe_3085, retro_pabe_3117, retro_pabe_3139, retro_pabe_3191, retro_pabe_3414, retro_pabe_3468, retro_pabe_3506, retro_pabe_352, retro_pabe_3622, retro_pabe_3651, retro_pabe_3662, retro_pabe_3669, retro_pabe_3675, retro_pabe_436, retro_pabe_497, retro_pabe_514, retro_pabe_551, retro_pabe_628, retro_pabe_655, retro_pabe_826, retro_pabe_844, retro_pabe_859, retro_pabe_865, retro_pabe_867, retro_pabe_933,
Rattus norvegicus	ENSRNOG00000006992	possible_ortholog	27 retrogenes	retro_rnor_1018, retro_rnor_1174, retro_rnor_1222, retro_rnor_1233, retro_rnor_1307, retro_rnor_1388, retro_rnor_1466, retro_rnor_1580, retro_rnor_1745, retro_rnor_1916, retro_rnor_1944, retro_rnor_2025, retro_rnor_2028, retro_rnor_2100, retro_rnor_2247, retro_rnor_2304, retro_rnor_2347, retro_rnor_2531, retro_rnor_2715, retro_rnor_2765, retro_rnor_2814, retro_rnor_2824, retro_rnor_530, retro_rnor_666, retro_rnor_911, retro_rnor_929, retro_rnor_977,
Ictidomys tridecemlineatus	ENSSTOG00000004586	ortholog_one2many	18 retrogenes	retro_itri_1025, retro_itri_1080, retro_itri_1358, retro_itri_1375, retro_itri_1412, retro_itri_1430, retro_itri_1464, retro_itri_1593, retro_itri_1776, retro_itri_271, retro_itri_346, retro_itri_349, retro_itri_351, retro_itri_390, retro_itri_534, retro_itri_542, retro_itri_827, retro_itri_917,
Tupaia belangeri	ENSTBEG00000002301	possible_ortholog	1 retrogene	retro_tbel_2042,
Tarsius syrichta	ENSTSYG00000006100	ortholog_one2many	25 retrogenes	retro_tsyr_1149, retro_tsyr_1200, retro_tsyr_1293, retro_tsyr_1297, retro_tsyr_1403, retro_tsyr_1598, retro_tsyr_1633, retro_tsyr_1850, retro_tsyr_1891, retro_tsyr_191, retro_tsyr_2109, retro_tsyr_2130, retro_tsyr_344, retro_tsyr_421, retro_tsyr_433, retro_tsyr_521, retro_tsyr_589, retro_tsyr_601, retro_tsyr_651, retro_tsyr_724, retro_tsyr_779, retro_tsyr_877, retro_tsyr_930, retro_tsyr_953, retro_tsyr_992,
Tursiops truncatus	ENSTTRG00000009074	ortholog_one2many	16 retrogenes	retro_ttru_1241, retro_ttru_1546, retro_ttru_1690, retro_ttru_174, retro_ttru_1776, retro_ttru_1918, retro_ttru_210, retro_ttru_290, retro_ttru_367, retro_ttru_402, retro_ttru_534, retro_ttru_604, retro_ttru_726, retro_ttru_852, retro_ttru_933, retro_ttru_952,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_btau_304	79.42	97.98	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_btau_426	96.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_btau_622	90.68	63.31	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_btau_668	94.40	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_btau_730	89.44	56.85	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_btau_750	68.79	55.65	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_btau_758	94.78	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_btau_863	93.57	56.45	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_btau_879	98.80	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_btau_1088	91.94	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_btau_1231	78.77	57.66	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_btau_1367	72.83	74.19	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_btau_1381	64.88	96.37	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_btau_1422	91.97	100.00	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_btau_1434	99.60	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_btau_1468	94.82	100.00	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_btau_1548	72.34	56.45	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_btau_1559	85.61	53.23	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_btau_1616	90.73	100.00	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_btau_1627	87.32	56.85	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_btau_1784	68.45	73.79	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_btau_1814	96.37	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSBTAG00000020139 retrocopies

Parental gene:	RPL7, ENSBTAG00000020139
Aliases:	None
Description:	60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q58DT1]
Organism:	*Cow (Bos taurus)*
Coordinates:	14:38741346..38744856(-)

Parental gene:

RPL7, ENSBTAG00000020139