Parental gene:

RPL21, ENSPVAG00000000077

Aliases:None
Description:ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1232:3234..5109(+)


>ENSPVAG00000000077
ATGACCAACACAAAGGGAAAGAGGAGAGGCACCCGCTATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTT
GGCCACATACATGCGAATCTACAAGAAAGGAGACATTGTAGACATCAAAGGAATGGGCACTGTTCAGAAAGGCATGCCCC
ACAAATGCTACCACGGCAAAACTGGAAGAGTCTACAACGTTACGCAGCATGCAGTCGGCATTGTTGTAAACAAACAAGTT
AAGGGCAAGATTCTTGCCAAGAGAATTAATGTACGTATTGAGCATATTAAGCACTCAAAGAGCCGAGACAGCTTCCTGAA
ACGTGTGAAGGAAAATGATCAAAAAAAGAAGGAAGCCAAAGAGAAAGGTACCTGGGTTCAGCTGAAGCGCCAGCCTGCTC
CACCCAGAGAAGCTCACTTTGTGAGAACAAATGGAAAGGAACCTGAGCTGCTGGAGCCCATTCCCTATGAATTCATGGCA
TGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001648 possible_ortholog 5 retrogenes
retro_btau_1383, retro_btau_194, retro_btau_209, retro_btau_93, retro_btau_976,
Callithrix jacchus ENSCJAG00000019355 possible_ortholog 1 retrogene
retro_cjac_152,
Cavia porcellus ENSCPOG00000008784 possible_ortholog 3 retrogenes
retro_cpor_2, retro_cpor_26, retro_cpor_41,
Equus caballus ENSECAG00000010661 possible_ortholog 5 retrogenes
retro_ecab_16, retro_ecab_24, retro_ecab_39, retro_ecab_88, retro_ecab_90,
Felis catus ENSFCAG00000006750 possible_ortholog 1 retrogene
retro_fcat_64,
Latimeria chalumnae ENSLACG00000012678 ortholog_one2one 1 retrogene
retro_lcha_32,
Loxodonta africana ENSLAFG00000003677 possible_ortholog 11 retrogenes
retro_lafr_1167, retro_lafr_308, retro_lafr_331, retro_lafr_583, retro_lafr_63, retro_lafr_652, retro_lafr_738, retro_lafr_740, retro_lafr_856, retro_lafr_89, retro_lafr_97,
Myotis lucifugus ENSMLUG00000010093 possible_ortholog 46 retrogenes
retro_mluc_1066, retro_mluc_1079, retro_mluc_1138, retro_mluc_1164, retro_mluc_1171, retro_mluc_1219, retro_mluc_1274, retro_mluc_1279, retro_mluc_1307, retro_mluc_1323, retro_mluc_1379, retro_mluc_1382, retro_mluc_1409, retro_mluc_1413, retro_mluc_1469, retro_mluc_1481, retro_mluc_1525, retro_mluc_162, retro_mluc_1647, retro_mluc_1753, retro_mluc_1803, retro_mluc_1849, retro_mluc_1862, retro_mluc_1929, retro_mluc_1969, retro_mluc_1981, retro_mluc_2044, retro_mluc_2077, retro_mluc_2109, retro_mluc_2121, retro_mluc_2212, retro_mluc_230, retro_mluc_2335, retro_mluc_2338, retro_mluc_2436, retro_mluc_2592, retro_mluc_27, retro_mluc_279, retro_mluc_360, retro_mluc_503, retro_mluc_554, retro_mluc_620, retro_mluc_631, retro_mluc_806, retro_mluc_961, retro_mluc_97,
Macaca mulatta ENSMMUG00000023368 possible_ortholog 2 retrogenes
retro_mmul_288, retro_mmul_45,
Monodelphis domestica ENSMODG00000008923 ortholog_one2many 1 retrogene
retro_mdom_156,
Mus musculus ENSMUSG00000041453 possible_ortholog 101 retrogenes
retro_mmus_1012, retro_mmus_1046, retro_mmus_1057, retro_mmus_1083, retro_mmus_1123, retro_mmus_1199, retro_mmus_1287, retro_mmus_1354, retro_mmus_1461, retro_mmus_1475, retro_mmus_1529, retro_mmus_1561, retro_mmus_1572, retro_mmus_1596, retro_mmus_1617, retro_mmus_1641, retro_mmus_1644, retro_mmus_17, retro_mmus_1714, retro_mmus_1739, retro_mmus_1762, retro_mmus_1797, retro_mmus_1848, retro_mmus_1860, retro_mmus_1862, retro_mmus_1875, retro_mmus_1897, retro_mmus_1915, retro_mmus_1931, retro_mmus_1936, retro_mmus_1994, retro_mmus_2042, retro_mmus_2049, retro_mmus_2101, retro_mmus_2130, retro_mmus_2176, retro_mmus_2179, retro_mmus_2185, retro_mmus_2214, retro_mmus_2233, retro_mmus_2237, retro_mmus_2238, retro_mmus_2279, retro_mmus_2309, retro_mmus_2312, retro_mmus_2335, retro_mmus_2344, retro_mmus_2395, retro_mmus_2447, retro_mmus_2517, retro_mmus_2567, retro_mmus_2585, retro_mmus_2598, retro_mmus_266, retro_mmus_2662, retro_mmus_2698, retro_mmus_2707, retro_mmus_2778, retro_mmus_2808, retro_mmus_2853, retro_mmus_2874, retro_mmus_2945, retro_mmus_2980, retro_mmus_3035, retro_mmus_3055, retro_mmus_3085, retro_mmus_3103, retro_mmus_3112, retro_mmus_3220, retro_mmus_3252, retro_mmus_3261, retro_mmus_3295, retro_mmus_3318, retro_mmus_3328, retro_mmus_333, retro_mmus_3341, retro_mmus_3446, retro_mmus_3545, retro_mmus_3581, retro_mmus_3712, retro_mmus_397, retro_mmus_400, retro_mmus_401, retro_mmus_598, retro_mmus_601, retro_mmus_606, retro_mmus_663, retro_mmus_734, retro_mmus_735, retro_mmus_758, retro_mmus_782, retro_mmus_806, retro_mmus_835, retro_mmus_862, retro_mmus_883, retro_mmus_918, retro_mmus_932, retro_mmus_940, retro_mmus_957, retro_mmus_993, retro_mmus_998,
Nomascus leucogenys ENSNLEG00000000327 possible_ortholog 6 retrogenes
retro_nleu_112, retro_nleu_1144, retro_nleu_26, retro_nleu_713, retro_nleu_95, retro_nleu_951,
Oryctolagus cuniculus ENSOCUG00000002506 possible_ortholog 10 retrogenes
retro_ocun_104, retro_ocun_122, retro_ocun_125, retro_ocun_159, retro_ocun_163, retro_ocun_186, retro_ocun_198, retro_ocun_209, retro_ocun_232, retro_ocun_86,
Pan troglodytes ENSPTRG00000005728 possible_ortholog 1 retrogene
retro_ptro_66,
Rattus norvegicus ENSRNOG00000000957 possible_ortholog 13 retrogenes
retro_rnor_227, retro_rnor_298, retro_rnor_319, retro_rnor_329, retro_rnor_330, retro_rnor_333, retro_rnor_365, retro_rnor_366, retro_rnor_416, retro_rnor_5, retro_rnor_79, retro_rnor_81, retro_rnor_82,
Sarcophilus harrisii ENSSHAG00000000845 ortholog_one2one 11 retrogenes
retro_shar_224, retro_shar_446, retro_shar_499, retro_shar_531, retro_shar_534, retro_shar_601, retro_shar_664, retro_shar_67, retro_shar_683, retro_shar_729, retro_shar_757,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_26 63.83 85.62
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2. retro_pvam_120 72.83 57.50
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3. retro_pvam_124 73.17 100.00
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4. retro_pvam_126 71.43 85.00
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5. retro_pvam_170 73.01 100.00
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6. retro_pvam_195 80.62 100.00
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7. retro_pvam_223 71.84 63.75
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8. retro_pvam_226 72.13 75.62
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9. retro_pvam_253 78.40 100.00
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10. retro_pvam_256 83.75 98.12
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11. retro_pvam_286 81.88 100.00
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12. retro_pvam_318 71.88 98.75
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13. retro_pvam_319 84.87 93.75
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14. retro_pvam_329 75.16 100.00
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15. retro_pvam_374 63.86 50.62
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16. retro_pvam_408 82.41 66.88
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17. retro_pvam_412 72.92 58.75
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18. retro_pvam_416 72.07 66.25
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19. retro_pvam_452 64.21 57.50
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20. retro_pvam_489 70.37 100.00
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21. retro_pvam_492 85.23 93.12
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22. retro_pvam_495 74.68 96.88
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23. retro_pvam_555 75.16 100.00
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24. retro_pvam_569 72.59 83.12
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25. retro_pvam_570 66.67 96.25
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26. retro_pvam_589 67.27 100.00
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27. retro_pvam_662 63.33 73.12
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28. retro_pvam_693 77.70 86.88
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29. retro_pvam_707 79.01 100.00
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30. retro_pvam_731 69.79 57.50
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31. retro_pvam_740 72.05 99.38
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32. retro_pvam_760 71.43 99.38
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33. retro_pvam_763 87.58 100.00
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34. retro_pvam_768 83.75 99.38
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35. retro_pvam_772 75.81 76.88
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36. retro_pvam_791 87.58 100.00
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37. retro_pvam_811 57.85 74.38
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38. retro_pvam_820 86.08 97.50
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39. retro_pvam_821 72.73 100.00
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40. retro_pvam_825 75.78 99.38
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41. retro_pvam_826 73.58 98.75
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42. retro_pvam_833 78.69 75.62
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43. retro_pvam_836 51.69 70.62
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44. retro_pvam_839 82.41 66.88
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45. retro_pvam_860 70.00 100.00
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46. retro_pvam_885 81.82 66.88
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47. retro_pvam_915 77.14 64.38
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48. retro_pvam_916 73.91 100.00
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49. retro_pvam_937 67.03 56.25
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50. retro_pvam_946 74.05 97.50
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51. retro_pvam_965 54.55 53.75
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52. retro_pvam_985 77.23 62.50
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53. retro_pvam_1010 80.25 99.38
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54. retro_pvam_1012 72.17 70.62
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55. retro_pvam_1013 68.18 94.38
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56. retro_pvam_1015 61.76 83.75
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57. retro_pvam_1030 84.47 100.00
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58. retro_pvam_1038 75.32 98.75
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59. retro_pvam_1041 89.72 66.88
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60. retro_pvam_1050 76.99 70.62
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61. retro_pvam_1073 86.25 100.00
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62. retro_pvam_1098 75.23 68.12
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63. retro_pvam_1103 82.32 100.00
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64. retro_pvam_1106 76.60 58.12
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65. retro_pvam_1109 86.34 100.00
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66. retro_pvam_1123 77.23 63.12
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67. retro_pvam_1210 79.25 99.38
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68. retro_pvam_1212 79.14 100.00
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69. retro_pvam_1247 80.45 82.50
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70. retro_pvam_1248 71.70 65.00
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71. retro_pvam_1256 83.12 99.38
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72. retro_pvam_1262 72.14 85.62
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73. retro_pvam_1281 81.32 56.88
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74. retro_pvam_1296 79.70 81.25
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75. retro_pvam_1308 74.07 66.88
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76. retro_pvam_1377 77.36 98.75
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77. retro_pvam_1381 75.00 91.88
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78. retro_pvam_1393 87.58 100.00
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79. retro_pvam_1425 69.75 100.00
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80. retro_pvam_1438 83.65 99.38
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81. retro_pvam_1459 61.70 57.50
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82. retro_pvam_1468 74.39 100.00
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Download FASTA sequences of all ENSPVAG00000000077 retrocopies