Parental gene:

NOLC1, ENSPTRG00000023882

Aliases:None
Description:Nucleolar and coiled-body phosphoprotein 1 [Source:UniProtKB/TrEMBL;Acc:K7BUI5]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:10:101365149..101375374(+)


>ENSPTRG00000023882
ATGGCGGACGCCGGCATTCGCCGCGTGGTTCCCAGCGACCTGTATCCCCTCGTGCTCGGCTTCCTGCGCGATAACCAACT
CTCAGAGGTGGCCAATAAGTTCGCCAAAGCGACAGGAGCTACACAGCAGGATGCCAATGCCTCTTCCCTCTTAGACATCT
ATAGCTTCTGGCTCAAGTCTGCCAAGGTCCCAGAGCGAAAGTTACAGGCAAATGGACCAGTGGCTAAGAAAGCTAAGAAG
AAGGCCTCATCCAGTGACAGTGAGGACAGCAGCGAGGAGGAGGAGGAAGTTCAAGGGCCTCCAGCAAAGAAGGCTGCTGT
ACCTGCCAAGCGAGTCGGTCTGCCCCCTGGGAAGGCTGCAGCCAAAGCATCAGAGAGTAGCAGCAGTGAAGAGTCCAGTG
ATGATGATGATGAGGAGGACCAAAAGAAACAGCCTGTCCAGAAGGGAGTTAAGCCCCAAGCCAAGGCAGCCAAAGCTCCT
CCTAAGAAGGCCAAGAGCTCTGATTCTGATTCTGACTCAAGCTCCGAGGATGAGCCACCAAAGAACCAGAAGCCAAAGAT
AACACCTGTGGCAGTTAAAGCTCAGACTAAAGCCCCTCCCAAACCAGCTCGAGCAGCACCTAAAGTAGCCAATGGTAAAG
CAGCCAGTAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGTGATGACTCAGAGGAGGAGAAGGCAGCAGCCACCCCC
AAGAAGGTCTGGGCCATAATTTCTGTCAGGGAAGAGACTGTACCTAAAAAGCAAGTTGTGGCCAAGGCCCCAGTGAAAGC
AGCTGCCACCCCTACCCGGAAGAGTTCCAGCAGTGAGGATTCCTCCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGA
AAAATAAACCAGGTCCCTACAGTTCAGTCCCCCCGCCTTCTGCTCCCCTACCAAAGAAGTCTCTGGGAACCCAGCCTCCC
AAGAAGGCTGTGGAGAAGCAGCAGCCTGTGGAAAGCAGTGAAGACAGCAGTGATGAGTGTGATTCAAGTTCTGAAGAAGA
GAAGAAACCCCCAACTAAGGCAGTAGTCTCTAAAGCAACCACTAAACCACCTCCAGCAAAGAAAGCAGCAGAGAGCTCTT
CAGACAGCTCAGACTCTGACAGCTCTGAGGATGATGAAGCTCCTTCTAAGCCAGCTGGTACCACCAAGAATTCTTCAAAT
AAGCCAGCTGTCACCACCAAGTCACCTGCAGTGAAGCCAGCTGCAGCCCCCAAGCAACCTGTGGGCGGTGGCCAGAAGCT
TCTGACGAGAAAGGCTGACAGCAGCTCCAGTGAGGAAGAGAGCAGCTCCAGTGAGGAGGAGAAGACAAAGAAGATGGTGG
CCACCACTAAGCCCAAGGCGACTGCCAAAGCAGCTCCACCTCTGCCTGCCAAGCAGGCTCCTCAGGGTAGTAGGGACAGC
AGCTCTGATTCAGACAGCTCCAGCAGTGAGGAGGAGGAAGAGAAGACATCTAAGTCTGCAGTTAAGAAGAAGCCACAGAA
GGTAGCAGGAGGTGCAGCCCCTTCCAAGCCAGCCTCTGCAAAGAAAGGAAAGGCTGAGAGCAGCAGCAGTTCTTCCTCTG
ATGACTCCAGTGAGGAAGAGGAAGAGAAGCCCAAGGGCAAGGGCTCTCCAAGACCACAAGCCCCCAAGGCCAATGGCACC
TCTGCACTGACTGCCCAGAATGGAAAAGCAGCTAAGAACAGTGAGGAGGAGGAAGAAGAAAAGAAAAAGGCGGCAGTGGT
AGTTTCCAAATCAGGTTCATTAAAGAAGCGGAAGCAGAATGAGGCTGCCAAGGAGGCAGAGACTCCTCAGGCCAAGAAGA
TAAAGCTTCAGACCCCTAACACATTTCCAAAAAGGAAGAAAGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGG
GAGGAGGAAATTGAGGTGGATTCACGAGTTGCAGACAACTCCTTTGATGCCAAGCGAGGTGCAGCCGGAGACTGGGGAGA
GCGAGCCAATCAGGTTTTGAAGTTCACCAAAGGCAAGTCCTTTCGGCATGAGAAAACCAAGAAGAAGCGGGGCAGCTACC
GGGGAGGCTCAATCTCTGTCCAGGTTAATTCTATTAAGTTTGACAGCGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .57 RPM
SRP007412_cerebellum 81 .41 RPM
SRP007412_heart 25 .12 RPM
SRP007412_kidney 29 .05 RPM
SRP007412_liver 63 .50 RPM
SRP007412_testis 35 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000010062 ortholog_one2one 1 retrogene
retro_cfam_1047,
Callithrix jacchus ENSCJAG00000017832 ortholog_one2one 2 retrogenes
retro_cjac_4136, retro_cjac_4187,
Homo sapiens ENSG00000166197 ortholog_one2one 1 retrogene
retro_hsap_4781,
Nomascus leucogenys ENSNLEG00000015012 ortholog_one2one 1 retrogene
retro_nleu_1101,
Pongo abelii ENSPPYG00000002595 ortholog_one2one 1 retrogene
retro_pabe_3721,
Tursiops truncatus ENSTTRG00000014974 ortholog_one2one 1 retrogene
retro_ttru_155,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3182 75.18 58.31
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Download FASTA sequences of all ENSPTRG00000023882 retrocopies