Parental gene: | NOLC1, ENSCJAG00000017832 |
| Aliases: | None |
| Description: | nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:15608] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:89482231..89494560(+) |
>ENSCJAG00000017832
ATGGCGGACGCCGGCTTGCGCCGCGTGGTTCCCAGCGACCTGTATCCCCTCGTCCTCGGCTTCCTGCGCGATAACCAACT
CTCGGAGGTGGCCAATAAGTTCGCCAAAGCGACGGGAGCTACACAGCAGGATGCCAATGCCTCTTCCCTCTTAGACATCT
ATAGCTTCTGGCTCAAGTCTGCCAAGGCGCCAGAGCGAAAGTTGCAGGCAAATGGACCAGTTACTAAGAAAGCTAAGAAG
AAGGCCTCATCCAGCGACAGTAGTGAGGACAGCAGCGAGGAGGAGGAGGAAGTTCTAGGGCCTCCAGCAAAGAAGGCTGC
TGTATCTGCCAAGCGAGTTGGTCTGCCTCCTGGAAAGGCTGCAGCCAAAGCATCGGAGAGCAGCAGCAGTGAAGAATCCA
GTGATGAGGAGGAGGAGGAGGACCAAAAGAAACAGCCTATCCAGAAGGGAGTTAAGCCCCAAGCCAAGACAGCCAAAGCT
CCACCTAAGAAGGCCAAGAGCTCTGATTCTGATTCTGACTCTGACTCAAGCTCCGAGGATGAGCCACCAAAGAACCAGAA
GCTAAAGATAACACCTCTAGCAGCTAAACCTCAGGCTAAAGCCCCACCTAAACCAGCTCGAGCAGCACCTAAAGTAGTCA
ATGGTAAAGCAGCCGGTAGTAGTAGCAGCAGCAGTGATGACTCAGAGGAGGAGAAGGCAGCAGCCACCCCCAAGAAGGTC
TGGGCCATAACTTCTGTCGGGGAAGAGACTGTACCTAAAAAGCAAGTTGTGGCCAAGGCCCCAGTGAAAGCAGCTGCCAC
CCCTACCCAGAAGAGTTCCAGCAGTGAGGATTCTTCCAGTGAGGAGGAAGAACAGCAGAAAAAACCCATGAAAAATAAAC
CAGGTCCGTATAGTTCAGTACCCCCACCTTCAGCTCCCCCACCAAAAAAGACCCTGGGAACCCAGCCTCCCAAGAAGGCT
GTGGAGAAGCAGCAGCCTGTGGAAAGCAGTGAAGACAGCAGCGATGAGTCTGATTCAAGTTCCGAAGAAGAGAAGAAATC
CCCAGCTAAGGCAGTCGTGTCTAAAGCAACCACTAAACCACCTCCAGCAAAGAAAGCAGCAGAGAGCTCTTCAGACAGCT
CAGACTCTGACAGCTCTGAGGAAGATGAAGATCCTTCCAAGCCAGCTGGTACCACCAAGAATTCCTCACATAAGCCAGCT
GGCACCACCAAGTCACCTGCAGCAAAGCCAGCTGCAGCCCCTAAGCAATCTTTGGGTGGTGGCCAGAAGCCTCTCATGCG
AAAGGCTGACAGCAGCTCCAGTGAGGAAGAGAGCAGTTCCAGTGAGGAGGAGAAGACAAAGAAGACAGTGGCCACCACTA
AGCCCAAGGCGACTGCCAAAGCAGCTCCACCTCTGCCTGCCAAGCAGGCTCCTCAGGGTAGTAGGGACAGCAGCTCTGAT
TCAGACAGCTCCAGCAGTGAGGAGGAGGAGGAAGAGAAGACGTCCAAGACCGCAGTTAAGAAGAAGCCACAGGAAGTAGC
AGGAGGTGCAGCCCCTTCCAAGCCAGCCTCTGCAAAGAAAGGAAAGCCTGAGAGCAGCAGCAGTTCTTCCTCTGATGACT
CCAGTGAGGAGGAAGAAGAGAAGCCCAAAGGCAAGGGCAAGGGCACTCCAAGACCACAAGCCCTCAAGGCCAGCAGCACC
TCTGCACTGACTGCCCAGAATGGAAAAGCAGCTAAGAACAGTGAGGAGGAGGAAGAAAAGAAAAAGGCAGCAGTGGCAGT
TTCCAAACCAGGTTCATTAAAGAAGCGGAAGCAGAATGAGGCTGCCAAGGAGGCAGAGACTCCTCAGGCTAAGAAGATAA
AGCTTCAGACCCCTAACACATTTCCAAAAAGGAAGAAAGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGGGAG
GAGGAAATTGAGGTGGATTCACGAGTGGCAGACAACTCCTTTGATGCCAAGCGAGGTGCAGCTGGAGACTGGGGAGAGCG
AGCCAATCAGGTTTTGAAGTTCACCAAAGGCAAGTCCTTCCGGCATGAGAAAACCAAGAAGAAGCGGGGCAGCTACCGGG
GAGGCTCCATCTCTGTTCAGGTCAATTCCGTGAAGTTTGACAGTGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 25 .47 RPM |
| SRP051959_heart | 24 .78 RPM |
| SRP051959_kidney | 26 .91 RPM |
| SRP051959_liver | 32 .21 RPM |
| SRP051959_lung | 29 .56 RPM |
| SRP051959_lymph_node | 33 .90 RPM |
| SRP051959_skeletal_muscle | 31 .36 RPM |
| SRP051959_spleen | 29 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000010062 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000166197 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015012 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002595 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000023882 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000014974 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_4136 | 67.44 | 65.59 | Please wait, loading  |
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| 2. | retro_cjac_4187 | 89.18 | 65.16 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000017832 retrocopies