Parental gene:

ACTB, ENSPTRG00000018890

Aliases:ACTB, beta-actin
Description:Pan troglodytes actin, beta (ACTB), mRNA. [Source:RefSeq mRNA;Acc:NM_001009945]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:4196863..4200361(-)


>ENSPTRG00000018890
ATGGATGATGATATCGCCGCGCTCGTTGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCCCC
CCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGATTCCTATG
TGGGCGACGAGGCCCAGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCTATCGAGCACGGCATCGTCACCAACTGGGAC
GACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCCGAGGAGCACCCCGTGCTGCTCACCGA
GGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGGCGCACAGTAGGTGCATCTCTGCCTTACAGATCATGT
TTGAGACCTTCAACACCCCAGCCATCCAGGCTGTGCTATCCCTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGAC
TCCGGTGACGGGGTCACCCACACTGTGCCCATCTACGAGGGGTATGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGC
TGGCCGGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAA
TCGTGCGTGACATTAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACGGCTGCTTCCAGCTCC
TCCCTGGAGAAGAGCTACGAGCTGCCTGACGGCCAGGTCATCACCATTGGCAATGAGCGGTTCCGCTGCCCTGAGGCACT
CTTCCAGCCTTCCTTCCTGGGCATGGAGTCCTGTGGCATCCACGAAACTACCTTCAACTCCATCATGAAGTGTGACGTGG
ACATCCGCAAAGACCTGTACGCCAACACAGTGCTGTCTGGCGGCACCACCATGTACCCTGGCATTGCCGACAGGATGCAG
AAGGAGATCACTGCCCTGGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGAT
CGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCCGGCCCCT
CCATCGTCCACCGCAAATGCTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1976 .36 RPM
SRP007412_cerebellum 1129 .84 RPM
SRP007412_heart 382 .11 RPM
SRP007412_kidney 1474 .96 RPM
SRP007412_liver 1774 .09 RPM
SRP007412_testis 315 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000010147 ortholog_one2one 1 retrogene
retro_apla_2,
Canis familiaris ENSCAFG00000016020 ortholog_one2one 3 retrogenes
retro_cfam_120, retro_cfam_260, retro_cfam_934,
Callithrix jacchus ENSCJAG00000000008 ortholog_one2one 2 retrogenes
retro_cjac_243, retro_cjac_56,
Dipodomys ordii ENSDORG00000010079 ortholog_one2one 1 retrogene
retro_dord_11,
Equus caballus ENSECAG00000015935 ortholog_one2one 2 retrogenes
retro_ecab_271, retro_ecab_994,
Felis catus ENSFCAG00000006788 ortholog_one2one 1 retrogene
retro_fcat_1613,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macaca mulatta ENSMMUG00000011153 ortholog_one2many 1 retrogene
retro_mmul_135,
Otolemur garnettii ENSOGAG00000008348 possible_ortholog 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pan troglodytes ENSPTRG00000002894 other_paralog 1 retrogene
retro_ptro_1567,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_53 91.98 99.73
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2. retro_ptro_178 77.13 67.47
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3. retro_ptro_263 83.78 68.53
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4. retro_ptro_314 79.94 86.93
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5. retro_ptro_387 87.55 66.13
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6. retro_ptro_432 77.93 58.67
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7. retro_ptro_584 78.60 71.47
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8. retro_ptro_1042 74.20 90.67
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9. retro_ptro_1051 80.05 100.00
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10. retro_ptro_1076 66.42 71.20
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11. retro_ptro_1143 75.00 50.93
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12. retro_ptro_1272 82.23 100.00
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13. retro_ptro_1515 87.32 56.53
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14. retro_ptro_1756 84.69 81.60
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15. retro_ptro_2122 77.20 50.93
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16. retro_ptro_2173 76.89 65.07
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17. retro_ptro_2349 81.43 99.47
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18. retro_ptro_2454 86.40 93.33
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19. retro_ptro_2805 85.64 98.40
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20. retro_ptro_2854 82.78 94.67
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21. retro_ptro_3207 80.93 61.68
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22. retro_ptro_3219 82.83 52.00
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23. retro_ptro_3282 81.87 100.00
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24. retro_ptro_3287 82.67 100.00
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25. retro_ptro_3292 82.67 100.00
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26. retro_ptro_3302 82.67 100.00
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27. retro_ptro_3307 82.40 100.00
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Download FASTA sequences of all ENSPTRG00000018890 retrocopies