Parental gene:

ACTB, ENSCJAG00000000008

Aliases:None
Description:actin, beta [Source:HGNC Symbol;Acc:132]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:15168354..15171920(+)


>ENSCJAG00000000008
ATGGATGATGATATCGCTGCACTTGTTGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTTGCGGGCGACGATGCTCC
CCGGGCCGTCTTCCCCTCTATCGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGACTCCTACG
TGGGTGACGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCATGGCATTGTCACCAACTGGGAC
GACATGGAGAAGATCTGGCACCACACTTTTTACAACGAGCTGCGTGTGGCTCCTGAGGAGCACCCCGTGCTGCTTACTGA
GGCCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTATG
TGGCCATCCAGGCTGTGCTTTCCTTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACC
CACACTGTGCCCATCTATGAGGGGTATGCCCTCCCCCACGCCATCCTACGTCTGGACCTGGCTGGCCGGGACCTGACTGA
CTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACAGCTGAGCGGGAAATCGTGCGTGACATCAAGG
AGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACGGCGGCCTCCAGCTCCTCCCTGGAGAAGAGCTAT
GAGCTGCCCGATGGTCAGGTCATCACCATCGGCAACGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCTTTCCT
GGGCATGGAATCTTGTGGCATCCACGAAACTACCTTTAACTCCATCATGAAATGTGACGTGGACATCCGCAAAGACCTGT
ATGCCAACACAGTGCTGTCTGGTGGTACCACCATGTACCCTGGCATCGCTGACAGGATGCAGAAGGAGATCACCGCCCTG
GCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCCGAGCGCAAGTACTCAGTGTGGATTGGTGGCTCCATCCTGGC
CTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCCGGCCCCTCCATCGTCCACCGCAAAT
GCTTCTAG

Library Parental gene expression (RPM)
SRP051959_colon 474 .83 RPM
SRP051959_heart 206 .24 RPM
SRP051959_kidney 218 .20 RPM
SRP051959_liver 80 .30 RPM
SRP051959_lung 291 .63 RPM
SRP051959_lymph_node 413 .82 RPM
SRP051959_skeletal_muscle 85 .32 RPM
SRP051959_spleen 347 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000010147 ortholog_one2one 1 retrogene
retro_apla_2,
Canis familiaris ENSCAFG00000016020 ortholog_one2one 3 retrogenes
retro_cfam_120, retro_cfam_260, retro_cfam_934,
Callithrix jacchus ENSCJAG00000002885 within_species_paralog 3 retrogenes
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Dipodomys ordii ENSDORG00000010079 ortholog_one2one 1 retrogene
retro_dord_11,
Equus caballus ENSECAG00000015935 ortholog_one2one 2 retrogenes
retro_ecab_271, retro_ecab_994,
Felis catus ENSFCAG00000006788 ortholog_one2one 1 retrogene
retro_fcat_1613,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macaca mulatta ENSMMUG00000011153 ortholog_one2many 1 retrogene
retro_mmul_135,
Otolemur garnettii ENSOGAG00000008348 possible_ortholog 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pan troglodytes ENSPTRG00000018890 ortholog_one2one 27 retrogenes
retro_ptro_1042, retro_ptro_1051, retro_ptro_1076, retro_ptro_1143, retro_ptro_1272, retro_ptro_1515, retro_ptro_1756, retro_ptro_178, retro_ptro_2122, retro_ptro_2173, retro_ptro_2349, retro_ptro_2454, retro_ptro_263, retro_ptro_2805, retro_ptro_2854, retro_ptro_314, retro_ptro_3207, retro_ptro_3219, retro_ptro_3282, retro_ptro_3287, retro_ptro_3292, retro_ptro_3302, retro_ptro_3307, retro_ptro_387, retro_ptro_432, retro_ptro_53, retro_ptro_584,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_56 98.30 100.00
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2. retro_cjac_243 91.71 99.73
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Download FASTA sequences of all ENSCJAG00000000008 retrocopies