Parental gene:

ACTB, ENSECAG00000015935

Aliases:None
Description:actin, cytoplasmic 1 [Source:RefSeq peptide;Acc:NP_001075307]
Organism:Horse (Equus caballus)
Coordinates:13:2463584..2465463(+)


>ENSECAG00000015935
GTCGACAACGGCTCCGGCATGTGCAAGGGCTTCGCGGGCGACGACGCTCCCCGCGCCGTCTTCCCCTCCATCGTGGGGCG
CCCCCGGCACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCATACGTGGGCGACGAGGCCCAGAGCAAGAGGGGCA
TCCTGACCCTCAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTC
TACAACGAGCTGCGCGTGGCCCCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGA
GAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACG
CCTCTGGCCGCACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACCCACACTGTGCCCATCTACGAGGGGTACGCC
CTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACGGACTACCTCATGAAGATCCTCACGGAGCGTGG
CTACAGCTTCACCACCACGGCCGAGAGGGAAATCGTGCGTGACATCAAGGAGAAGCTCTGCTATGTCGCCCTGGACTTCG
AGCAGGAGATGGCCACCGCGGCCTCCAGCTCTTCCCTGGAGAAGAGCTACGAGCTGCCCGACGGCCAGGTCATCACCATC
GGCAACGAGCGGTTCCGCGCCCCCGAGGCCCTCTTCCAGCCCTCCTTCCTGGGCATGGAATCCAGTGGCATCCACGAAAC
TACCTTCAACTCCATCATGAAGTGTGACGTCGACATCCGTAAGGACCTGTACGCCAACACAGTGCTGTCGGGTGGGACCA
CCATGTACCCAGGCATCGCCGACAGGATGCAGAAGGAGATCACAGCCCTGGCTCCCAGCACGATGAAGATCAAGATCATT
GCGCCCCCTGAGCGCAAGTACTCCGTATGGATCGGCGGCTCCATTCTGGCCTCATTGTCCACCTTCCAGCAGATGTGGAT
CAGCAAGCAGGAGTACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 299 .28 RPM
SRP021940_cerebellum 493 .67 RPM
SRP021940_embryo 1174 .91 RPM
SRP021940_placental_villous 1350 .86 RPM
SRP021940_synovial_membrane 1075 .57 RPM
SRP021940_testis 313 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000010147 ortholog_one2one 1 retrogene
retro_apla_2,
Canis familiaris ENSCAFG00000016020 ortholog_one2one 3 retrogenes
retro_cfam_120, retro_cfam_260, retro_cfam_934,
Callithrix jacchus ENSCJAG00000000008 ortholog_one2one 2 retrogenes
retro_cjac_243, retro_cjac_56,
Dipodomys ordii ENSDORG00000010079 ortholog_one2one 1 retrogene
retro_dord_11,
Equus caballus ENSECAG00000018600 within_species_paralog 1 retrogene
retro_ecab_98,
Felis catus ENSFCAG00000006788 ortholog_one2one 1 retrogene
retro_fcat_1613,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macaca mulatta ENSMMUG00000011153 ortholog_one2many 1 retrogene
retro_mmul_135,
Otolemur garnettii ENSOGAG00000008348 possible_ortholog 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pan troglodytes ENSPTRG00000018890 ortholog_one2one 27 retrogenes
retro_ptro_1042, retro_ptro_1051, retro_ptro_1076, retro_ptro_1143, retro_ptro_1272, retro_ptro_1515, retro_ptro_1756, retro_ptro_178, retro_ptro_2122, retro_ptro_2173, retro_ptro_2349, retro_ptro_2454, retro_ptro_263, retro_ptro_2805, retro_ptro_2854, retro_ptro_314, retro_ptro_3207, retro_ptro_3219, retro_ptro_3282, retro_ptro_3287, retro_ptro_3292, retro_ptro_3302, retro_ptro_3307, retro_ptro_387, retro_ptro_432, retro_ptro_53, retro_ptro_584,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_271 93.18 96.16
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2. retro_ecab_994 63.51 56.99
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Download FASTA sequences of all ENSECAG00000015935 retrocopies