Parental gene:

ENSPTRG00000016949

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:45859198..45877135(+)


>ENSPTRG00000016949
ATGTGTCATCGAAAGCCAGGTACACCAGGGGTTGGAAAAACCACACTAGGCAAAGAACTTGCGTCAAAATCAGGACTGAA
ATACATTAATGTGGGTGATTTAGCTCGAGAAGAGCAATTGTATGATGGCTATGATGAAGAGTATGACTGTCCCATTTTAG
ATGAAGACAGAGTAGTTGATGAGTTAGATAACCAAATGAGAGAAGGTGGAGTTATTGTTGATTACCATGGTTGTGATTTC
TTCCCTGAACGCTGGTTTCATATAGTTTTTGTGCTGAGAACAGATACCAATGTATTGTACGAAAGACTTGAAACAAGGGG
TTATAATGAGAAGAAACTAACAGACAATATTCAGTGTGAGATTTTTCAAGTTCTTTATGAAGAAGCCACAGCATCCTACA
AGGAAGAAATCGTGCATCAGCTGCCCAGTAATAAACCAGAAGAGCTAGAAAATAATGTAGATCAGATCTTGAAATGGATT
GAGCAGTGGATCAAAGATCATAACTCTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .35 RPM
SRP007412_cerebellum 11 .65 RPM
SRP007412_heart 16 .47 RPM
SRP007412_kidney 12 .32 RPM
SRP007412_liver 9 .00 RPM
SRP007412_testis 104 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012471 ortholog_one2one 4 retrogenes
retro_chof_1120, retro_chof_1976, retro_chof_734, retro_chof_84,
Callithrix jacchus ENSCJAG00000036421 ortholog_one2many 1 retrogene
retro_cjac_3025,
Dasypus novemcinctus ENSDNOG00000024524 ortholog_one2one 3 retrogenes
retro_dnov_1274, retro_dnov_2010, retro_dnov_398,
Gorilla gorilla ENSGGOG00000015545 ortholog_one2one 1 retrogene
retro_ggor_864,
Macropus eugenii ENSMEUG00000016022 ortholog_one2one 12 retrogenes
retro_meug_1043, retro_meug_132, retro_meug_134, retro_meug_1480, retro_meug_1547, retro_meug_1622, retro_meug_284, retro_meug_332, retro_meug_364, retro_meug_427, retro_meug_722, retro_meug_897,
Myotis lucifugus ENSMLUG00000028932 ortholog_one2one 4 retrogenes
retro_mluc_1134, retro_mluc_1330, retro_mluc_1661, retro_mluc_458,
Monodelphis domestica ENSMODG00000019421 ortholog_one2many 14 retrogenes
retro_mdom_1016, retro_mdom_1136, retro_mdom_1204, retro_mdom_1430, retro_mdom_1826, retro_mdom_1827, retro_mdom_2023, retro_mdom_409, retro_mdom_459, retro_mdom_519, retro_mdom_55, retro_mdom_666, retro_mdom_845, retro_mdom_913,
Mustela putorius furo ENSMPUG00000014588 ortholog_one2one 1 retrogene
retro_mputfur_830,
Mus musculus ENSMUSG00000078941 ortholog_one2one 2 retrogenes
retro_mmus_3717, retro_mmus_814,
Nomascus leucogenys ENSNLEG00000004086 ortholog_one2one 2 retrogenes
retro_nleu_2237, retro_nleu_2670,
Oryctolagus cuniculus ENSOCUG00000020970 ortholog_one2many 1 retrogene
retro_ocun_6,
Otolemur garnettii ENSOGAG00000027736 ortholog_one2one 4 retrogenes
retro_ogar_1080, retro_ogar_2051, retro_ogar_3344, retro_ogar_876,
Pongo abelii ENSPPYG00000015527 ortholog_one2one 3 retrogenes
retro_pabe_3298, retro_pabe_483, retro_pabe_835,
Rattus norvegicus ENSRNOG00000039848 ortholog_one2many 1 retrogene
retro_rnor_280,
Sarcophilus harrisii ENSSHAG00000017216 ortholog_one2one 2 retrogenes
retro_shar_451, retro_shar_511,
Ictidomys tridecemlineatus ENSSTOG00000024448 ortholog_one2one 2 retrogenes
retro_itri_1475, retro_itri_995,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_138 50.62 91.12
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2. retro_ptro_761 84.67 88.17
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3. retro_ptro_2726 89.86 87.57
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4. retro_ptro_3286 84.67 88.76
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5. retro_ptro_3291 84.67 88.76
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6. retro_ptro_3299 84.87 88.76
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7. retro_ptro_3301 84.87 88.76
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8. retro_ptro_3303 84.67 88.76
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9. retro_ptro_3306 84.87 88.76
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10. retro_ptro_3308 84.67 88.76
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Download FASTA sequences of all ENSPTRG00000016949 retrocopies