Parental gene:

DPPA3, ENSPTRG00000004617

Aliases:None
Description:developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:19199]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:7939266..7945568(+)


>ENSPTRG00000004617
ATGGACCCATCACAGTTTAATCCAACCTACATCCCAGGGTCTCCACAAATGCTTACCGAAGAAAATTCCCGGGACGATTC
AGGGGCCTCTCAAATCTCCTCCGAGACGTTGATAAAGAACCTTAGTAACTTGACTATCAACGCTAGTAGCGAATCTGTTT
CCCCTCTATCGGAAGCTTTACTCCGTCGAGAGTCTGTAGGAGCAGCAGTCCTCAGGGAAATCGAAGATGAGTGGCTTTAC
AGCAGGAGAGGAGTAAGAACATTGCTGTCTGTGCAGAGAGAAAAGATGGCAAGATTGAGATACATGTTACTCGGCGGAGT
TCGTAGGCATGAAAGAAGACCAACAAACAAGGAGCCTAAGGGAGTTAAGAAGGAATCAAGACCATTCAAATGTCCCTGCA
GTTTCTGCGTGTCTAATGGATGGGATCCTTCTGAGAATGCTAGAATAGGGAATCAAGACACCAAGCCACTTCAGCCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046609 ortholog_one2one 1 retrogene
retro_btau_1001,
Canis familiaris ENSCAFG00000032092 ortholog_one2one 1 retrogene
retro_cfam_1926,
Callithrix jacchus ENSCJAG00000005409 ortholog_one2one 10 retrogenes
retro_cjac_1329, retro_cjac_1446, retro_cjac_1465, retro_cjac_1474, retro_cjac_2052, retro_cjac_2628, retro_cjac_3162, retro_cjac_4006, retro_cjac_622, retro_cjac_730,
Homo sapiens ENSG00000187569 ortholog_one2one 6 retrogenes
retro_hsap_1043, retro_hsap_1323, retro_hsap_1618, retro_hsap_2648, retro_hsap_4010, retro_hsap_4887,
Gorilla gorilla ENSGGOG00000013040 ortholog_one2one 4 retrogenes
retro_ggor_1849, retro_ggor_2693, retro_ggor_3052, retro_ggor_823,
Mustela putorius furo ENSMPUG00000017530 ortholog_one2many 3 retrogenes
retro_mputfur_1220, retro_mputfur_1452, retro_mputfur_520,
Mus musculus ENSMUSG00000046323 ortholog_one2one 4 retrogenes
retro_mmus_1186, retro_mmus_1682, retro_mmus_1838, retro_mmus_3598,
Nomascus leucogenys ENSNLEG00000026887 ortholog_one2one 2 retrogenes
retro_nleu_2041, retro_nleu_914,
Otolemur garnettii ENSOGAG00000024813 ortholog_one2one 7 retrogenes
retro_ogar_1514, retro_ogar_1618, retro_ogar_1775, retro_ogar_1780, retro_ogar_1964, retro_ogar_2538, retro_ogar_3406,
Pongo abelii ENSPPYG00000004230 ortholog_one2one 6 retrogenes
retro_pabe_1338, retro_pabe_1962, retro_pabe_2323, retro_pabe_3586, retro_pabe_873, retro_pabe_975,
Rattus norvegicus ENSRNOG00000022950 ortholog_one2many 4 retrogenes
retro_rnor_1249, retro_rnor_1816, retro_rnor_2234, retro_rnor_395,
Tursiops truncatus ENSTTRG00000000751 ortholog_one2one 3 retrogenes
retro_ttru_1293, retro_ttru_1911, retro_ttru_84,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_711 73.75 100.00
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2. retro_ptro_904 98.12 100.00
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3. retro_ptro_1085 60.37 100.00
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4. retro_ptro_1783 57.50 98.11
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5. retro_ptro_2701 56.98 52.83
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6. retro_ptro_2722 60.64 57.86
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7. retro_ptro_3148 95.00 100.00
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Download FASTA sequences of all ENSPTRG00000004617 retrocopies