Parental gene:

RPS15, ENSPPYG00000009317

Aliases:None
Description:40S ribosomal protein S15 [Source:UniProtKB/Swiss-Prot;Acc:Q5RDI7]
Organism:Orangutan (Pongo abelii)
Coordinates:19:1379196..1383560(+)


>ENSPPYG00000009317
ATGGCAGAAGTAGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTGGACCAGCTGCTGGA
CATGTCCTACGAGCAGCTGATGCAGCTGTACAGTGCGCGCCAGCGGCGGCGGCTGAACCGGGGCCTGCGGCGGAAGCAGC
ACTCCCTGCTGAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCGCCCATGGAGAAGCCGGAAGTGGTGAAGACGCACCTG
CGGGACATGATCATCCTGCCCGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAAGACCTTCAACCAGGTGGAGAT
CAAGCCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCCGTAAAGCACGGCCGGCCCGGCATCG
GGGCCACTCACTCCTCCCGCTTCATCCCTCTCAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 114 .62 RPM
SRP007412_cerebellum 92 .30 RPM
SRP007412_heart 64 .84 RPM
SRP007412_kidney 186 .05 RPM
SRP007412_liver 133 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019718 ortholog_one2many 1 retrogene
retro_btau_1856,
Callithrix jacchus ENSCJAG00000005632 possible_ortholog 13 retrogenes
retro_cjac_143, retro_cjac_151, retro_cjac_1517, retro_cjac_1607, retro_cjac_1672, retro_cjac_1714, retro_cjac_2069, retro_cjac_2236, retro_cjac_2596, retro_cjac_2656, retro_cjac_48, retro_cjac_756, retro_cjac_86,
Cavia porcellus ENSCPOG00000003968 possible_ortholog 1 retrogene
retro_cpor_495,
Dasypus novemcinctus ENSDNOG00000000706 possible_ortholog 2 retrogenes
retro_dnov_173, retro_dnov_85,
Echinops telfairi ENSETEG00000008645 possible_ortholog 1 retrogene
retro_etel_2,
Felis catus ENSFCAG00000010769 ortholog_one2many 1 retrogene
retro_fcat_1570,
Homo sapiens ENSG00000115268 ortholog_one2many 4 retrogenes
retro_hsap_1484, retro_hsap_2341, retro_hsap_2650, retro_hsap_530,
Gorilla gorilla ENSGGOG00000002818 possible_ortholog 4 retrogenes
retro_ggor_1136, retro_ggor_116, retro_ggor_141, retro_ggor_1851,
Macaca mulatta ENSMMUG00000003050 possible_ortholog 2 retrogenes
retro_mmul_2130, retro_mmul_838,
Monodelphis domestica ENSMODG00000005119 ortholog_one2many 1 retrogene
retro_mdom_1335,
Mus musculus ENSMUSG00000063457 ortholog_one2many 8 retrogenes
retro_mmus_1270, retro_mmus_208, retro_mmus_2734, retro_mmus_2786, retro_mmus_3166, retro_mmus_3642, retro_mmus_520, retro_mmus_917,
Nomascus leucogenys ENSNLEG00000001651 possible_ortholog 8 retrogenes
retro_nleu_105, retro_nleu_1858, retro_nleu_1922, retro_nleu_2390, retro_nleu_2465, retro_nleu_2559, retro_nleu_461, retro_nleu_544,
Otolemur garnettii ENSOGAG00000015776 possible_ortholog 4 retrogenes
retro_ogar_194, retro_ogar_210, retro_ogar_2237, retro_ogar_96,
Pan troglodytes ENSPTRG00000010200 possible_ortholog 1 retrogene
retro_ptro_122,
Pteropus vampyrus ENSPVAG00000003168 ortholog_one2many 2 retrogenes
retro_pvam_382, retro_pvam_926,
Rattus norvegicus ENSRNOG00000024603 ortholog_one2one 8 retrogenes
retro_rnor_1384, retro_rnor_1711, retro_rnor_1712, retro_rnor_178, retro_rnor_2086, retro_rnor_2114, retro_rnor_2642, retro_rnor_700,
Sarcophilus harrisii ENSSHAG00000013424 possible_ortholog 1 retrogene
retro_shar_632,
Sus scrofa ENSSSCG00000023248 possible_ortholog 1 retrogene
retro_sscr_271,
Ictidomys tridecemlineatus ENSSTOG00000006423 possible_ortholog 2 retrogenes
retro_itri_722, retro_itri_939,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_67 92.41 100.00
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2. retro_pabe_893 90.34 100.00
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3. retro_pabe_1233 82.73 93.79
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4. retro_pabe_2321 94.48 100.00
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Download FASTA sequences of all ENSPPYG00000009317 retrocopies