Parental gene:

ENSCJAG00000005632

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:1135033..1137475(+)


>ENSCJAG00000005632
ATGGCAGAGGTCGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTGGACCAGCTGCTGGA
CATGTCCTACGAGCATCAGATGCAGCTGTACAGTGCGTGCCAGCGGCGGCGGCAGAGCCGGGGCCTTCGGCGGAAGCAGC
ACTCAATGCTCAAGCGCCTGCGCAAGGCCAAGAAGGAGGCACCGCCCATGGAGAAGCCGGAAGTGGTGAATACGCACCTG
CGGGACATGATCATCCTGCCCGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAAGACTTTCACACAGGTGGAGAT
CAAGCCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCCGTGAAGCACGGCCGGCCGGGCATCG
GGGCCACTCACTCGTCCCGCTTCATCCCCCTCAAGTAG

Library Parental gene expression (RPM)
SRP051959_colon 19 .21 RPM
SRP051959_heart 13 .72 RPM
SRP051959_kidney 14 .82 RPM
SRP051959_liver 24 .09 RPM
SRP051959_lung 17 .21 RPM
SRP051959_lymph_node 36 .07 RPM
SRP051959_skeletal_muscle 20 .46 RPM
SRP051959_spleen 21 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019718 ortholog_one2many 1 retrogene
retro_btau_1856,
Cavia porcellus ENSCPOG00000003968 possible_ortholog 1 retrogene
retro_cpor_495,
Dasypus novemcinctus ENSDNOG00000000706 possible_ortholog 2 retrogenes
retro_dnov_173, retro_dnov_85,
Echinops telfairi ENSETEG00000008645 ortholog_one2one 1 retrogene
retro_etel_2,
Felis catus ENSFCAG00000010769 ortholog_one2many 1 retrogene
retro_fcat_1570,
Homo sapiens ENSG00000115268 ortholog_one2many 4 retrogenes
retro_hsap_1484, retro_hsap_2341, retro_hsap_2650, retro_hsap_530,
Gorilla gorilla ENSGGOG00000002818 possible_ortholog 4 retrogenes
retro_ggor_1136, retro_ggor_116, retro_ggor_141, retro_ggor_1851,
Macaca mulatta ENSMMUG00000003050 possible_ortholog 2 retrogenes
retro_mmul_2130, retro_mmul_838,
Monodelphis domestica ENSMODG00000005119 ortholog_one2many 1 retrogene
retro_mdom_1335,
Mus musculus ENSMUSG00000063457 ortholog_one2many 8 retrogenes
retro_mmus_1270, retro_mmus_208, retro_mmus_2734, retro_mmus_2786, retro_mmus_3166, retro_mmus_3642, retro_mmus_520, retro_mmus_917,
Nomascus leucogenys ENSNLEG00000001651 possible_ortholog 8 retrogenes
retro_nleu_105, retro_nleu_1858, retro_nleu_1922, retro_nleu_2390, retro_nleu_2465, retro_nleu_2559, retro_nleu_461, retro_nleu_544,
Otolemur garnettii ENSOGAG00000015776 possible_ortholog 4 retrogenes
retro_ogar_194, retro_ogar_210, retro_ogar_2237, retro_ogar_96,
Pongo abelii ENSPPYG00000009317 possible_ortholog 4 retrogenes
retro_pabe_1233, retro_pabe_2321, retro_pabe_67, retro_pabe_893,
Pan troglodytes ENSPTRG00000010200 possible_ortholog 1 retrogene
retro_ptro_122,
Pteropus vampyrus ENSPVAG00000003168 ortholog_one2many 2 retrogenes
retro_pvam_382, retro_pvam_926,
Rattus norvegicus ENSRNOG00000024603 possible_ortholog 8 retrogenes
retro_rnor_1384, retro_rnor_1711, retro_rnor_1712, retro_rnor_178, retro_rnor_2086, retro_rnor_2114, retro_rnor_2642, retro_rnor_700,
Sarcophilus harrisii ENSSHAG00000013424 possible_ortholog 1 retrogene
retro_shar_632,
Sus scrofa ENSSSCG00000023248 possible_ortholog 1 retrogene
retro_sscr_271,
Ictidomys tridecemlineatus ENSSTOG00000006423 possible_ortholog 2 retrogenes
retro_itri_722, retro_itri_939,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_48 73.33 91.03
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2. retro_cjac_86 71.03 100.00
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3. retro_cjac_143 75.00 96.55
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4. retro_cjac_151 73.61 99.31
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5. retro_cjac_756 69.86 100.00
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6. retro_cjac_1517 75.17 99.31
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7. retro_cjac_1607 65.89 88.28
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8. retro_cjac_1672 80.14 100.00
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9. retro_cjac_1714 81.38 100.00
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10. retro_cjac_2069 80.95 100.00
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11. retro_cjac_2236 70.83 98.62
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12. retro_cjac_2596 80.14 100.00
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13. retro_cjac_2656 73.88 91.03
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Download FASTA sequences of all ENSCJAG00000005632 retrocopies