Parental gene:

SRSF10, ENSPPYG00000001726

Aliases:SRSF10, FUSIP1, SFRS13A
Description:splicing factor, arginine/serine-rich 13A [Source:RefSeq peptide;Acc:NP_001125358]
Organism:Orangutan (Pongo abelii)
Coordinates:1:206460200..206471799(+)


>ENSPPYG00000001726
ATGTCCCGCTACCTGCGTCCCCCCAACACGTCTCTGTTCGTCAGGAACGTGGCCGACGACACCAGGTCTGAAGACTTGCG
GCGTGAATTTGGTCGTTATGGTCCTATAGTTGATGTGTATGTTCCACTTGATTTCTACACTCGCCGTCCAAGAGGATTTG
CTTATGTTCAATTTGAGGATGTTCGTGATGCTGAAGACGCTTTACATAATTTGGACAGAAAGTGGATTTGTGGACGGCAG
ATTGAAATACAGTTTGCCCAGGGGGATCGAAAGACACCAAATCAGATGAAAGCCAAGGAAGGGAGGAATGTGTACAGTTC
TTCACGCTATGATGATTATGACAGATACAGACGTTCTAGAAGCCGAAGTTATGAAAGGAGGAGATCAAGAAGTCGGTCTT
TTGATTACAACTATAGAAGATCGTATAGTCCTAGAAACAGTAGACCGACTGGAAGACCACGGCGTAGCAGAAGCCATTCC
GACAATGATAGATTCAAACACCGAAATCGATCTTTTTCAAGATCTAAATCCAATTCAAGATCACGGTCCAAGTCCCAGCC
CAAGAAAGAAATGAAGGCTAAATCACGTTCTAGGTCTGCATCTCACACCAAAACTAGAGGCACCTCTAAAACAGATTCCA
AAACACATTATAAGTCTGGCTCAAGATATGAAAAGGAATCAAGGAAAAAAGAACCACCTAGATCCAAATCTCAGTCAAGA
TCACAGTCTAGGTCTAGGTCAAAATCTAGATCAAGGTCTTGGACTAGTCCTAAGTCCAGTGGCCACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 25 .71 RPM
SRP007412_cerebellum 40 .49 RPM
SRP007412_heart 18 .94 RPM
SRP007412_kidney 26 .19 RPM
SRP007412_liver 20 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009869 ortholog_one2one 2 retrogenes
retro_amel_1810, retro_amel_355,
Bos taurus ENSBTAG00000008072 ortholog_one2one 1 retrogene
retro_btau_759,
Choloepus hoffmanni ENSCHOG00000004836 ortholog_one2one 1 retrogene
retro_chof_7,
Callithrix jacchus ENSCJAG00000020883 ortholog_one2many 9 retrogenes
retro_cjac_1126, retro_cjac_1170, retro_cjac_2176, retro_cjac_2595, retro_cjac_2638, retro_cjac_3852, retro_cjac_628, retro_cjac_705, retro_cjac_864,
Cavia porcellus ENSCPOG00000024533 possible_ortholog 1 retrogene
retro_cpor_1098,
Dasypus novemcinctus ENSDNOG00000008699 possible_ortholog 3 retrogenes
retro_dnov_1327, retro_dnov_1809, retro_dnov_2244,
Erinaceus europaeus ENSEEUG00000014286 ortholog_one2one 1 retrogene
retro_eeur_522,
Homo sapiens ENSG00000188529 ortholog_one2one 5 retrogenes
retro_hsap_1343, retro_hsap_1940, retro_hsap_2445, retro_hsap_3054, retro_hsap_4295,
Gorilla gorilla ENSGGOG00000000392 ortholog_one2one 4 retrogenes
retro_ggor_1044, retro_ggor_1411, retro_ggor_1522, retro_ggor_2870,
Myotis lucifugus ENSMLUG00000028520 ortholog_one2one 1 retrogene
retro_mluc_89,
Mustela putorius furo ENSMPUG00000015845 ortholog_one2one 1 retrogene
retro_mputfur_353,
Nomascus leucogenys ENSNLEG00000013180 ortholog_one2one 3 retrogenes
retro_nleu_1647, retro_nleu_1825, retro_nleu_202,
Oryctolagus cuniculus ENSOCUG00000029326 possible_ortholog 1 retrogene
retro_ocun_717,
Otolemur garnettii ENSOGAG00000015374 ortholog_one2one 2 retrogenes
retro_ogar_2650, retro_ogar_2987,
Rattus norvegicus ENSRNOG00000007992 ortholog_one2one 3 retrogenes
retro_rnor_1657, retro_rnor_2800, retro_rnor_2829,
Sus scrofa ENSSSCG00000021615 ortholog_one2one 2 retrogenes
retro_sscr_528, retro_sscr_554,
Ictidomys tridecemlineatus ENSSTOG00000000956 ortholog_one2one 1 retrogene
retro_itri_1333,
Tursiops truncatus ENSTTRG00000016150 ortholog_one2one 2 retrogenes
retro_ttru_1098, retro_ttru_695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1115 79.46 96.95
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2. retro_pabe_1601 68.18 81.30
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3. retro_pabe_1796 73.33 61.45
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4. retro_pabe_2529 82.22 68.32
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Download FASTA sequences of all ENSPPYG00000001726 retrocopies