Parental gene:

RPA2, ENSPPYG00000001651

Aliases:None
Description:replication protein A 32 kDa subunit [Source:RefSeq peptide;Acc:NP_001125362]
Organism:Orangutan (Pongo abelii)
Coordinates:1:202413747..202438530(+)


>ENSPPYG00000001651
ATGGGCAGAGAAGACAGGAACAAGCGTAGCATTCGTGAGCACCGATTGGCTGAAGCGAGAAGCACCTGGGAGCTGACTGG
CTCCGCCATTCGCGGGAAGGAGTTTGTGGCGCCCGAGAAAAGTAGCCAGAGCGGCGCAGTGGCGGCCGCCTTCTGTGGTT
TTCCGCGATTCCCCCAGACCCGAACCTTCTCGGCCTCTTTGCGGAGAATCGTGACCAAGATGTGGAACAGTGGATTCGAA
AGCTATGGCAGCTCCTCATACGGGGGAGCCGGCGGCTACACGCAGTCCCCGGGGGGCTTTGGATCGCCCGCACCTTCTCA
GGCCGAAAAGAAATCAAGAGCCCGAGCCCAGCACATTGTGCCCTGTACTATATCTCAGCTGCTTTCTGCCACTTTGGTTG
ATGAAGTGTTCAGAATTGGGAATGTTGAGATTTCACAGGTCACTATTGTGGGGATCATCAGACATGCAGAGAAGGCTCCA
ACCAACATTGTTTACAAAATAGATGACATGACAGCTGCACCCATGGACGTTCGCCAGTGGGTTGACACAGATGACGCCAG
CAGTGAAAACACTGTGGTTCCTCCAGAAACATATGTGAAAGTGGCAGGCCACCTGAGATCTTTTCAGAACAAAAAGAGCC
TGGTAGCCTTTAAGATCATGCCCCTGGAGGATATGAATGAGTTCACCACACATATTCTGGAAGTGATCAATGCACACATG
GTACTAAGCAAAGCCAACAGCCAGCCCTCAGCAGGGAGAGCACCTATCAGCAATCCAGGAATGAGTGAAGCAGGGAACTT
CGGTGGGAATAGCTTCATGCCAGCAAATGGCCTCACTGTGGCCCAAAACCAGGTGTTGAATTTGATTAAGGCTTGTCCAA
GACCTGAAGGGTTGAACTTTCAGGATCTTAAGAACCAGCTGAAACACATGTCTGTATCCTCAGTCAAGCAAGCTGTGGAT
TTTCTGAGCAATGAGGGGCACATCTATTCTACTGTAGATGATGACCATTTTAAATCCACAGATGCAGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .71 RPM
SRP007412_cerebellum 21 .28 RPM
SRP007412_heart 7 .13 RPM
SRP007412_kidney 16 .44 RPM
SRP007412_liver 10 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006225 ortholog_one2one 5 retrogenes
retro_btau_1093, retro_btau_1228, retro_btau_1359, retro_btau_406, retro_btau_633,
Callithrix jacchus ENSCJAG00000009473 ortholog_one2many 1 retrogene
retro_cjac_225,
Homo sapiens ENSG00000117748 ortholog_one2one 2 retrogenes
retro_hsap_704, retro_hsap_815,
Gorilla gorilla ENSGGOG00000015287 ortholog_one2one 2 retrogenes
retro_ggor_599, retro_ggor_668,
Loxodonta africana ENSLAFG00000014387 ortholog_one2one 1 retrogene
retro_lafr_519,
Macaca mulatta ENSMMUG00000018172 ortholog_one2one 2 retrogenes
retro_mmul_1081, retro_mmul_2172,
Nomascus leucogenys ENSNLEG00000009702 ortholog_one2one 3 retrogenes
retro_nleu_1409, retro_nleu_250, retro_nleu_2511,
Oryctolagus cuniculus ENSOCUG00000016194 ortholog_one2many 1 retrogene
retro_ocun_1180,
Otolemur garnettii ENSOGAG00000015583 ortholog_one2one 2 retrogenes
retro_ogar_1838, retro_ogar_2066,
Pan troglodytes ENSPTRG00000000420 ortholog_one2one 1 retrogene
retro_ptro_566,
Pteropus vampyrus ENSPVAG00000001449 ortholog_one2one 1 retrogene
retro_pvam_166,
Ictidomys tridecemlineatus ENSSTOG00000004433 ortholog_one2one 2 retrogenes
retro_itri_1257, retro_itri_773,
Tursiops truncatus ENSTTRG00000007507 ortholog_one2one 1 retrogene
retro_ttru_873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_523 78.39 56.85
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2. retro_pabe_728 82.51 75.80
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Download FASTA sequences of all ENSPPYG00000001651 retrocopies