Parental gene:

MMU.9948, ENSMMUG00000018172

Aliases:None
Description:replication protein A 32 kDa subunit [Source:RefSeq peptide;Acc:NP_001247563]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:30587671..30609635(-)


>ENSMMUG00000018172
ATGTGGAACAGTGGATTCGAAAGCTATGGCAGCTCCTCATATGGGGGAGCCGGCGGCTACACGCAGTCCCCGGGGGGCTT
TGGATCGCCCGCACCTTCTCAGGCCGAAAAGAAATCAAGAGCCCGAGCCCAGCACATTGTACCCTGTACTATATCTCAGC
TGCTTTCTGCCACTTTGGTTGATGAAGTGTTCAGAATTGGGAATGTTGAGATTTCACAGGTCACTATTGTGGGGATCATC
AGACATGCAGAGAAGGCTCCAACCAACATTGTTTACAAAATAGATGACATGACAGCTGCACCCATGGACGTTCGCCAGTG
GGTTGACACAGATGATGCCAGCAGTGAAAACACTGTGGTTCCTCCAGAAACATATGTGAAAGTGGCAGGCCACCTGAGAT
CTTTTCAGAACAAAAAGAGCCTGGTAGCCTTTAAAATCATGCCCCTGGAGGATATGAATGAGTTCACCACACATATTCTG
GAAGTGATCAATGCACACATGGTACTAAGCAAAGCCAACAGCCAGCCCTCAGCAGGGAGAGCACCTATCAGCAATCCAGG
AATGAGTGAAGCAGGGAACTTCGGTGGGAATAGCTTCCTGCCAGCAAATGGCCTCACTGTGGCCCAAAACCAGGTGTTGA
ATTTGATTAAGGCTTGTCCAAGACCTGAAGGGTTGAACTTTCAGGATCTCAAGAACCAGCTGAAACACATGTCTGTATCT
TCAATCAAGCAAGCTGTGGATTTTCTGAGCAATGAGGGGCACATCTATTCTACTGTGGATGATGACCATTTTAAATCCAC
AGATGCAGAATAA

Library Parental gene expression (RPM)
SRP007412_brain 11 .21 RPM
SRP007412_brain_prefrontal_cortex 8 .25 RPM
SRP007412_cerebellum 15 .76 RPM
SRP007412_heart 9 .95 RPM
SRP007412_kidney 15 .02 RPM
SRP007412_liver 7 .76 RPM
SRP007412_testis 41 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006225 ortholog_one2one 5 retrogenes
retro_btau_1093, retro_btau_1228, retro_btau_1359, retro_btau_406, retro_btau_633,
Callithrix jacchus ENSCJAG00000009473 ortholog_one2many 1 retrogene
retro_cjac_225,
Homo sapiens ENSG00000117748 ortholog_one2one 2 retrogenes
retro_hsap_704, retro_hsap_815,
Gorilla gorilla ENSGGOG00000015287 ortholog_one2one 2 retrogenes
retro_ggor_599, retro_ggor_668,
Loxodonta africana ENSLAFG00000014387 ortholog_one2one 1 retrogene
retro_lafr_519,
Nomascus leucogenys ENSNLEG00000009702 ortholog_one2one 3 retrogenes
retro_nleu_1409, retro_nleu_250, retro_nleu_2511,
Oryctolagus cuniculus ENSOCUG00000016194 ortholog_one2many 1 retrogene
retro_ocun_1180,
Otolemur garnettii ENSOGAG00000015583 ortholog_one2one 2 retrogenes
retro_ogar_1838, retro_ogar_2066,
Pongo abelii ENSPPYG00000001651 ortholog_one2one 2 retrogenes
retro_pabe_523, retro_pabe_728,
Pan troglodytes ENSPTRG00000000420 ortholog_one2one 1 retrogene
retro_ptro_566,
Pteropus vampyrus ENSPVAG00000001449 ortholog_one2one 1 retrogene
retro_pvam_166,
Ictidomys tridecemlineatus ENSSTOG00000004433 ortholog_one2one 2 retrogenes
retro_itri_1257, retro_itri_773,
Tursiops truncatus ENSTTRG00000007507 ortholog_one2one 1 retrogene
retro_ttru_873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1081 86.03 100.00
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2. retro_mmul_2172 59.76 61.48
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Download FASTA sequences of all ENSMMUG00000018172 retrocopies