Parental gene:

RPA2, ENSG00000117748

Aliases:RPA2, REPA2, RPA32
Description:replication protein A2, 32kDa [Source:HGNC Symbol;Acc:10290]
Organism:Human (Homo sapiens)
Coordinates:1:28218034..28241257(-)


>ENSG00000117748
ATGTGGAACAGTGGATTCGAAAGCTATGGCAGCTCCTCATACGGGGGAGCCGGCGGCTACACGCAGTCCCCGGGGGGCTT
TGGATCGCCCGCACCTTCTCAAGCCGAAAAGAAATCAAGAGCCCGAGCCCAGCACATTGTGCCCTGTACTATATCTCAGC
TGCTTTCTGCCACTTTGGTTGATGAAGTGTTCAGAATTGGGAATGTTGAGATTTCACAGGTCACTATTGTGGGGATCATC
AGACATGCAGAGAAGGCTCCAACCAACATTGTTTACAAAATAGATGACATGACAGCTGCACCCATGGACGTTCGCCAGTG
GGTTGACACAGATGACACCAGCAGTGAAAACACTGTGGTTCCTCCAGAAACATATGTGAAAGTGGCAGGCCACCTGAGAT
CTTTTCAGAACAAAAAGAGCCTGGTAGCCTTTAAGATCATGCCCCTGGAGGATATGAATGAGTTCACCACACATATTCTG
GAAGTGATCAATGCACACATGGTACTAAGCAAAGCCAACAGCCAGCCCTCAGCAGGGAGAGCACCTATCAGCAATCCAGG
AATGAGTGAAGCAGGGAACTTTGGTGGGAATAGCTTCATGCCAGCAAATGGCCTCACTGTGGCCCAAAACCAGGTGTTGA
ATTTGATTAAGGCTTGTCCAAGACCTGAAGGGTTGAACTTTCAGGATCTCAAGAACCAGCTGAAACACATGTCTGTATCC
TCAATCAAGCAAGCTGTGGATTTTCTGAGCAATGAGGGGCACATCTATTCTACTGTGGATGATGACCATTTTAAATCCAC
AGATGCAGAATAA

Library Parental gene expression (RPM)
bodymap2_adipose 27 .77 RPM
bodymap2_adrenal 63 .43 RPM
bodymap2_brain 36 .94 RPM
bodymap2_breast 50 .41 RPM
bodymap2_colon 28 .79 RPM
bodymap2_heart 16 .84 RPM
bodymap2_kidney 33 .13 RPM
bodymap2_liver 11 .17 RPM
bodymap2_lung 23 .28 RPM
bodymap2_lymph_node 40 .37 RPM
bodymap2_ovary 58 .33 RPM
bodymap2_prostate 41 .38 RPM
bodymap2_skeletal_muscle 31 .06 RPM
bodymap2_testis 115 .72 RPM
bodymap2_thyroid 52 .99 RPM
bodymap2_white_blood_cells 79 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006225 ortholog_one2one 5 retrogenes
retro_btau_1093, retro_btau_1228, retro_btau_1359, retro_btau_406, retro_btau_633,
Callithrix jacchus ENSCJAG00000009473 ortholog_one2many 1 retrogene
retro_cjac_225,
Gorilla gorilla ENSGGOG00000015287 ortholog_one2one 2 retrogenes
retro_ggor_599, retro_ggor_668,
Loxodonta africana ENSLAFG00000014387 ortholog_one2one 1 retrogene
retro_lafr_519,
Macaca mulatta ENSMMUG00000018172 ortholog_one2one 2 retrogenes
retro_mmul_1081, retro_mmul_2172,
Nomascus leucogenys ENSNLEG00000009702 ortholog_one2one 3 retrogenes
retro_nleu_1409, retro_nleu_250, retro_nleu_2511,
Oryctolagus cuniculus ENSOCUG00000016194 ortholog_one2many 1 retrogene
retro_ocun_1180,
Otolemur garnettii ENSOGAG00000015583 ortholog_one2one 2 retrogenes
retro_ogar_1838, retro_ogar_2066,
Pongo abelii ENSPPYG00000001651 ortholog_one2one 2 retrogenes
retro_pabe_523, retro_pabe_728,
Pan troglodytes ENSPTRG00000000420 ortholog_one2one 1 retrogene
retro_ptro_566,
Pteropus vampyrus ENSPVAG00000001449 ortholog_one2one 1 retrogene
retro_pvam_166,
Ictidomys tridecemlineatus ENSSTOG00000004433 ortholog_one2one 2 retrogenes
retro_itri_1257, retro_itri_773,
Tursiops truncatus ENSTTRG00000007507 ortholog_one2one 1 retrogene
retro_ttru_873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_704 86.27 83.09
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2. retro_hsap_815 77.42 67.78
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Download FASTA sequences of all ENSG00000117748 retrocopies