Parental gene:

RBM39, ENSOPRG00000002183

Aliases:None
Description:RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_5232:114584..188724(-)


>ENSOPRG00000002183
ATGGCAGACGATATTGATATTGAAGCCATGCTTGAGGCTCCCTACAAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGAGGAAAAAAAGCAAGACCAGGAGTCGAAGTCATGAACGGGAGAGAAGCAAAAGTAAGG
AGCGCAAGAGAATCAGAGATAGAGAAAGGAAAAAGAGCAAAAGCCGGGAAAGGAAGCGAAGAAGAAGCGAAAGGAGAAGC
CGATCAAGACGACGCAGATTTCGAGGTCGTTACAGAAGCCCTTACTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAA
GATTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCCTTCAGAAAAGACAAGAGCCCAG
TGAGAGAGCCTATAGATAATCTAACTCCTGAGGAAAGAGATGCTCGGACAGTATTCTGTATGCAGTTGGCAGCAAGAATT
CGACCACGGGATTTGGAAGAATTCTTTTCTACAGTAGGAAAGGTTCGAGATGTGCGGATGATTTCTGATAGAAATTCAAG
ACGTTCCAAGGGAATTGCTTATGTGGAGTTTGTCGATGTGAGCTCAGTGCCTCTAGCAATAGGATTAACCGGCCAGCGAG
TTTTAGGAGTGCCAATCATAGTACAAGCTTCACAGGCAGAGAAAAACAGAGCTGCAGCAATGGCGAACAATTTACAAAAA
GGGAGTGCTGGACCTATGAGACTTTATGTGGGCTCATTACACTTTAACATAACAGAAGACATGCTTAGAGGAATCTTTGA
GCCTTTTGGAAGGATTGAAAGTATACAGCTCATGATGGATAGTGAAACAGGTCGTTCGAAAGGATATGGATTTATTACAT
TTTCTGATTCAGAATGTGCCAAAAAGGCTTTAGAACAGCTGAATGGATTTGAACTAGCAGGAAGGCCGATGAAGGTTGGT
CATGTTACTGAGCGTACTGATGCTTCCAGTGCTAGTTCATTTTTGGATAGTGATGAACTGGAAAGGACTGGAATTGACTT
GGGAACAACTGGTCGTCTGCAGTTAATGGCAAGACTTGCAGAGGGTACTGGTTTGCAGATTCCTCCAGCAGCACAGCAAG
CACTGCAAATGAGTGGTTCTTTGGCATTTGGTGCTGTGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGAAGAAGAAGTTGGATGGGATACAGAGATTAAGGATGATGTGATTGAAGAATGTAATAAGCATG
GAGGAGTGATTCATATTTATGTTGACAAGAATTCAGCTCAG

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000017535 ortholog_one2one 1 retrogene
retro_cjac_2199,
Homo sapiens ENSG00000131051 ortholog_one2one 1 retrogene
retro_hsap_4679,
Gorilla gorilla ENSGGOG00000003950 ortholog_one2one 1 retrogene
retro_ggor_2902,
Myotis lucifugus ENSMLUG00000003000 ortholog_one2one 1 retrogene
retro_mluc_1152,
Macaca mulatta ENSMMUG00000031284 ortholog_one2many 1 retrogene
retro_mmul_2491,
Mus musculus ENSMUSG00000027620 ortholog_one2one 3 retrogenes
retro_mmus_1512, retro_mmus_2792, retro_mmus_2793,
Nomascus leucogenys ENSNLEG00000010350 ortholog_one2one 1 retrogene
retro_nleu_2170,
Otolemur garnettii ENSOGAG00000011227 ortholog_one2many 1 retrogene
retro_ogar_267,
Ochotona princeps ENSOPRG00000001092 within_species_paralog 2 retrogenes
retro_opri_126, retro_opri_412,
Pongo abelii ENSPPYG00000010963 ortholog_one2one 1 retrogene
retro_pabe_3634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_55 72.18 56.10
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2. retro_opri_913 72.18 56.10
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Download FASTA sequences of all ENSOPRG00000002183 retrocopies