Parental gene: | Rbm39, ENSMUSG00000027620 |
| Aliases: | Rbm39, 1500012C14Rik, 2310040E03Rik, B330012G18Rik, C79248, R75070, Rnpc2, caper |
| Description: | RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 2:156147238..156180238(-) |
>ENSMUSG00000027620
ATGGCAGACGATATTGATATTGAAGCCATGCTTGAGGCCCCTTACAAGAAGGATGAGAACAAGTTGAACAGTGCTAACGG
CCATGAAGAACGTAGCAAAAAGAGAAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAGAGAAAAAGAAGCAAAAGTAAAG
AACGGAAAAGAAGTAGAGATAGAGAAAGGAAAAAGAGCAAAAGTCGAGAGCGGAAACGAAGTAGAAGCAAAGAAAGGAGA
CGAAGCCGCTCACGCAGTCGGGATAGAAGATTCCGAGGCCGCTACAGAAGTCCCTACTCCGGACCAAAATTTAACAGTGC
CATCCGAGGAAAGATTGGATTGCCTCATAGCATCAAATTAAGCAGAAGACGTTCCCGAAGCAAAAGTCCATTTAGGAAAG
ACAAGAGCCCTGTGAGGGAACCTATTGATAATCTCACTCCTGAGGAAAGGGATGCAAGGACTGTTTTCTGCATGCAACTG
GCAGCAAGAATTCGACCGAGAGATTTGGAAGAGTTTTTCTCTACAGTTGGAAAGGTTCGAGATGTGAGAATGATTTCTGA
TAGAAATTCAAGACGTTCCAAAGGAATTGCATATGTGGAATTTGTTGATGTCAGTTCAGTGCCTCTAGCAATTGGATTAA
CTGGCCAACGAGTTTTAGGAGTGCCAATCATAGTTCAGGCATCACAGGCAGAAAAAAACAGAGCTGCTGCAATGGCAAAC
AATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTCTATGTAGGCTCATTACACTTTAACATAACTGAAGACATGCTTCG
GGGGATCTTTGAACCTTTTGGAAGGATTGAAAGTATTCAGCTCATGATGGATAGTGAAACTGGCCGATCTAAGGGATATG
GATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTGAATGGATTTGAGTTAGCTGGGAGACCA
ATGAAAGTTGGTCACGTTACTGAACGAACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGACGAACTAGAAAGGAC
TGGAATTGACTTGGGAACAACTGGACGTCTTCAGTTAATGGCAAGACTTGCGGAGGGTACCGGTTTGCAGATTCCACCTG
CCGCACAACAAGCATTACAAATGAGTGGCTCTCTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAA
ACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGTCTGTTCAACCTCTTGCAACACAGTGTTTCCA
ACTTTCTAACATGTTTAATCCTCAAACAGAAGAAGAAGTTGGATGGGATACAGAGATTAAAGATGATGTCATTGAAGAAT
GTAATAAACATGGAGGAGTCATTCATATTTATGTTGATAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCT
ATTGCTGCGGCTATTGCTGCTGTCAATGCATTGCATGGCAGATGGTTTGCTGGTAAAATGATAACAGCAGCGTATGTACC
TCTTCCAACTTACCACAACCTCTTTCCTGATTCTATGACAGCAACACAACTACTGGTTCCAAGTAGACGATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 173 .63 RPM |
| SRP007412_cerebellum | 164 .96 RPM |
| SRP007412_heart | 103 .01 RPM |
| SRP007412_kidney | 177 .91 RPM |
| SRP007412_liver | 90 .75 RPM |
| SRP007412_testis | 85 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000017535 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000131051 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000031284 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000011227 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000002183 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000010963 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1512 | 80.61 | 55.09 | Please wait, loading  |
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| 2. | retro_mmus_2792 | 69.28 | 65.08 | Please wait, loading |
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| 3. | retro_mmus_2793 | 71.53 | 55.73 | Please wait, loading |
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Download FASTA sequences of all ENSMUSG00000027620 retrocopies