Parental gene:

RBM39, ENSCJAG00000017535

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:1461276..1504529(+)


>ENSCJAG00000017535
ATGGCAGACGATATTGATATTGAAGCAATGCTTGAGGCTCCTTACAAGAAGGATGAGAACAAGTTGAGCAGTGCCAACGG
CCATGAAGAACGTAGCAAAAAGAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGG
AACGGAAGCGAAGTAGAGATAGAGAAAGGAAAAAGAGCAAAAGCCGTGAAAGGAAGCGAAGTAGAAGCAAAGAAAGACGA
CGGAGCCGCTCAAGAAGTCGAGATCGGAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGC
CATCCGAGGAAAGATTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAG
ACAAGAGCCCTGTGAGGGAACCTATTGATAATCTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTG
GCAGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTCTGA
CAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTTGTTGATGTTAGCTCGGTGCCTCTAGCAATAGGATTAA
CTGGCCAACGAGTTTTAGGAGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAATAGAGCTGCAGCAATGGCAAAC
AATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGTTCATTACACTTTAATATAACTGAAGATATGCTTCG
TGGGATCTTTGAGCCTTTCGGAAGGATTGAAAGTATCCAGCTCATGATGGACAGTGAAACTGGTCGATCCAAGGGATATG
GATTTATTACATTTTCTGATTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCAGGAAGGCCA
ATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCAAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGAC
TGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCTGAGGGTACAGGTTTGCAGATTCCACCAG
CAGCACAGCAGGCTCTACAAATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAA
ACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTGGCAACTCAGTGTTTTCA
ACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACAGAGATTAAGGATGATGTGATTGAAGAAT
GTAATAAGCACGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCGTCA
ATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACGGCAGCATATGTACC
TCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAACTACTGGTTCCAAGTAGACGATGA

Library Parental gene expression (RPM)
SRP051959_colon 83 .69 RPM
SRP051959_heart 90 .93 RPM
SRP051959_kidney 115 .68 RPM
SRP051959_liver 81 .57 RPM
SRP051959_lung 141 .30 RPM
SRP051959_lymph_node 180 .31 RPM
SRP051959_skeletal_muscle 85 .23 RPM
SRP051959_spleen 148 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008482 within_species_paralog 1 retrogene
retro_cjac_1069,
Homo sapiens ENSG00000131051 ortholog_one2one 1 retrogene
retro_hsap_4679,
Macaca mulatta ENSMMUG00000031284 possible_ortholog 1 retrogene
retro_mmul_2491,
Mus musculus ENSMUSG00000027620 ortholog_one2one 3 retrogenes
retro_mmus_1512, retro_mmus_2792, retro_mmus_2793,
Otolemur garnettii ENSOGAG00000011227 possible_ortholog 1 retrogene
retro_ogar_267,
Ochotona princeps ENSOPRG00000002183 ortholog_one2one 2 retrogenes
retro_opri_55, retro_opri_913,
Pongo abelii ENSPPYG00000010963 ortholog_one2one 1 retrogene
retro_pabe_3634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2199 85.25 71.65
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Download FASTA sequences of all ENSCJAG00000017535 retrocopies