Parental gene:

RBM39, ENSG00000131051

Aliases:RBM39, CAPER, CAPERalpha, FSAP59, HCC1, RNPC2
Description:RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923]
Organism:Human (Homo sapiens)
Coordinates:20:34291530..34330234(-)


>ENSG00000131051
ATGGCAGACGATATTGATATTGAAGCAATGCTTGAGGCTCCTTACAAGAAGGATGAGAACAAGTTGAGCAGTGCCAACGG
CCATGAAGAACGTAGCAAAAAGAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGG
AACGGAAGCGAAGTAGAGACAGAGAAAGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGA
CGGAGCCGCTCAAGAAGTCGAGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGC
CATCCGAGGAAAGATTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAG
ACAAGAGCCCTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTG
GCGGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTCTGA
CAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCAATAGGATTAA
CTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCTGCAGCAATGGCAAAC
AATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCAACATAACTGAAGATATGCTTCG
TGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATG
GATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCAGGAAGACCA
ATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGAC
TGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAG
CAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAA
ACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCA
ACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAAT
GTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCA
ATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACC
TCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGA

Library Parental gene expression (RPM)
bodymap2_adipose 102 .17 RPM
bodymap2_adrenal 273 .70 RPM
bodymap2_brain 123 .27 RPM
bodymap2_breast 150 .92 RPM
bodymap2_colon 213 .89 RPM
bodymap2_heart 87 .21 RPM
bodymap2_kidney 235 .63 RPM
bodymap2_liver 79 .81 RPM
bodymap2_lung 223 .44 RPM
bodymap2_lymph_node 305 .72 RPM
bodymap2_ovary 273 .17 RPM
bodymap2_prostate 262 .94 RPM
bodymap2_skeletal_muscle 65 .97 RPM
bodymap2_testis 170 .73 RPM
bodymap2_thyroid 292 .17 RPM
bodymap2_white_blood_cells 160 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000017535 ortholog_one2one 1 retrogene
retro_cjac_2199,
Macaca mulatta ENSMMUG00000031284 possible_ortholog 1 retrogene
retro_mmul_2491,
Mus musculus ENSMUSG00000027620 ortholog_one2one 3 retrogenes
retro_mmus_1512, retro_mmus_2792, retro_mmus_2793,
Otolemur garnettii ENSOGAG00000011227 possible_ortholog 1 retrogene
retro_ogar_267,
Ochotona princeps ENSOPRG00000002183 ortholog_one2one 2 retrogenes
retro_opri_55, retro_opri_913,
Pongo abelii ENSPPYG00000010963 ortholog_one2one 1 retrogene
retro_pabe_3634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4679 88.53 100.00
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Download FASTA sequences of all ENSG00000131051 retrocopies