Parental gene:

ENSOCUG00000005712

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:7:138010409..138040498(+)


>ENSOCUG00000005712
ATGGTCATGGCGGAGGGGACGGCAGTGTTGAGGCGGAACAGGCCGGGCACCAAGGCGCAGGATTTCTATAATTGGCCTGA
TGAATCCTTTGATGAAATGGACAGTACACTTGCTGTTCAGCAGTATATTCAGCAGAACATAAGAGCAGATTGCTCCAATA
TTGATAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTATGGAAGTATGAACATTTAAGGCAATTCTGTCTTGAG
CTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACTTGTACTCAAATGACAGCAACTGAACAGTGGAT
TTTTCTGTGTGCAGCTCATAAAACTCCAAAAGAGTGTCCTGCTATAGACTATACTAGACACACGCTTGATGGTGCTGCAT
GTCTTCTGAATAGCAATAAATATTTTCCTAGCAGGGTTAGCATAAAGGAATCATCTGTAGCAAAACTAGGATCAGTATGC
CGTAGGATTTATAGAATATTTTCGCATGCTTATTTTCATCACCGGCAGATATTTGATGAATATGAAAATGAAACCTTTTT
GTGTCATCGGTTTACTAAATTTGTGATGAAATACAATTTGATGTCCAAGGATAACCTGATTGTACCAATTTTAGAAGAGG
AAGTTCAGAATTCAGTTTCTGGAGAAAGTGAAGCATGA

Library Parental gene expression (RPM)
SRP017611_brain 8 .83 RPM
SRP017611_kidney 8 .11 RPM
SRP017611_liver 2 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000884 possible_ortholog 5 retrogenes
retro_chof_1077, retro_chof_1354, retro_chof_1631, retro_chof_177, retro_chof_213,
Callithrix jacchus ENSCJAG00000004020 possible_ortholog 2 retrogenes
retro_cjac_1960, retro_cjac_3238,
Cavia porcellus ENSCPOG00000012746 possible_ortholog 2 retrogenes
retro_cpor_318, retro_cpor_804,
Dasypus novemcinctus ENSDNOG00000008252 possible_ortholog 1 retrogene
retro_dnov_211,
Echinops telfairi ENSETEG00000000932 ortholog_one2one 1 retrogene
retro_etel_952,
Homo sapiens ENSG00000115540 possible_ortholog 2 retrogenes
retro_hsap_2275, retro_hsap_906,
Gorilla gorilla ENSGGOG00000009005 possible_ortholog 2 retrogenes
retro_ggor_733, retro_ggor_743,
Latimeria chalumnae ENSLACG00000015430 ortholog_one2many 1 retrogene
retro_lcha_112,
Microcebus murinus ENSMICG00000008599 possible_ortholog 1 retrogene
retro_mmur_1280,
Macaca mulatta ENSMMUG00000016547 possible_ortholog 1 retrogene
retro_mmul_829,
Monodelphis domestica ENSMODG00000012305 ortholog_one2many 2 retrogenes
retro_mdom_1333, retro_mdom_963,
Nomascus leucogenys ENSNLEG00000006881 ortholog_one2one 2 retrogenes
retro_nleu_287, retro_nleu_376,
Otolemur garnettii ENSOGAG00000000272 possible_ortholog 1 retrogene
retro_ogar_2739,
Ochotona princeps ENSOPRG00000016650 possible_ortholog 2 retrogenes
retro_opri_444, retro_opri_812,
Pongo abelii ENSPPYG00000013047 possible_ortholog 6 retrogenes
retro_pabe_1943, retro_pabe_2021, retro_pabe_3600, retro_pabe_781, retro_pabe_795, retro_pabe_970,
Pan troglodytes ENSPTRG00000012775 ortholog_one2one 3 retrogenes
retro_ptro_1609, retro_ptro_626, retro_ptro_640,
Sarcophilus harrisii ENSSHAG00000017821 ortholog_one2many 1 retrogene
retro_shar_351,
Sus scrofa ENSSSCG00000016079 ortholog_one2one 2 retrogenes
retro_sscr_804, retro_sscr_824,
Ictidomys tridecemlineatus ENSSTOG00000021024 possible_ortholog 1 retrogene
retro_itri_727,
Tarsius syrichta ENSTSYG00000001726 ortholog_one2many 1 retrogene
retro_tsyr_1673,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_30 100.00 100.00
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Download FASTA sequences of all ENSOCUG00000005712 retrocopies