Parental gene:

Zcchc17, ENSMUSG00000028772

Aliases:Zcchc17, 2810055E05Rik, HSPC251, LDC4, pNO40, pS1D
Description:zinc finger, CCHC domain containing 17 [Source:MGI Symbol;Acc:MGI:1919955]
Organism:Mouse (Mus musculus)
Coordinates:4:130315382..130359943(-)


>ENSMUSG00000028772
ATGAATTCAGGAAGGCCTGAGACCATGGAGAACTTGCCTGCACTGTATACTATTTTTCAAGGAGAGGTTGCTATGGTGAC
AGACTATGGAGCTTTTATCAAAATCCCAGGCTGTCGGAAGCAAGGTCTGGTCCATCGAACTCACATGTCGTCCTGTCGAG
TGGATAAGCCTTCTGAGATAGTAGATGTTGGAGACAAAGTGTGGGTGAAGCTGATTGGCCGAGAGATGAAAAATGATAGA
ATAAAAGTGTCCCTCTCCATGAAAGTTGTCAACCAAGGAACTGGGAAAGACCTCGATCCCAACAACGTTGTCATTGAGCA
AGAAGAGAGGCGCAGACGGTCCTTCCAGGATTACACTGGGCAGAAGATCACCCTTGAGGCCGTCCTGAACACGACCTGCA
AGAAGTGTGGCTGCAAAGGCCACTTTGCCAAGGACTGTTTCATGCAGCCAGGTGGAACCAAGTATTCTCTGATCCCTGAA
GAGGAAGAGGAAAAAGAGGAGGCAAAGGCAGAAGGACTTGAGAAGCCTGATCCCACGAAGAATTCTTCCAGGAAGAGAAA
GAAGGAAAAGAAGAAAAAGAAACATAGAGACAGGAAGTCATCTGACTGTGATAGCTCTGACTCTGAGAGTGACACGGGCA
AGAAGGCGAGGCATTCATCAAAAGACAGCAAGGCCACCAAGAAGAAAAAGAAGAAGAAGAAGCACAAGAAGAAGCACAAG
GAATGA

Library Parental gene expression (RPM)
SRP007412_brain 39 .97 RPM
SRP007412_cerebellum 42 .68 RPM
SRP007412_heart 19 .11 RPM
SRP007412_kidney 20 .52 RPM
SRP007412_liver 13 .03 RPM
SRP007412_testis 10 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017710 possible_ortholog 1 retrogene
retro_amel_1501,
Bos taurus ENSBTAG00000016818 ortholog_one2many 2 retrogenes
retro_btau_168, retro_btau_273,
Canis familiaris ENSCAFG00000011131 ortholog_one2many 2 retrogenes
retro_cfam_485, retro_cfam_835,
Callithrix jacchus ENSCJAG00000006259 ortholog_one2one 1 retrogene
retro_cjac_4218,
Dasypus novemcinctus ENSDNOG00000000509 ortholog_one2one 1 retrogene
retro_dnov_2548,
Echinops telfairi ENSETEG00000007421 ortholog_one2one 1 retrogene
retro_etel_1280,
Myotis lucifugus ENSMLUG00000000594 ortholog_one2one 1 retrogene
retro_mluc_2176,
Monodelphis domestica ENSMODG00000017082 ortholog_one2many 1 retrogene
retro_mdom_252,
Mustela putorius furo ENSMPUG00000015442 ortholog_one2one 1 retrogene
retro_mputfur_680,
Sorex araneus ENSSARG00000007944 ortholog_one2one 1 retrogene
retro_sara_691,
Tursiops truncatus ENSTTRG00000014870 ortholog_one2one 2 retrogenes
retro_ttru_1383, retro_ttru_1613,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2150 84.95 85.06
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Download FASTA sequences of all ENSMUSG00000028772 retrocopies