Parental gene:

ZCCHC17, ENSDNOG00000000509

Aliases:None
Description:zinc finger, CCHC domain containing 17 [Source:HGNC Symbol;Acc:30246]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2435:2..49826(+)


>ENSDNOG00000000509
CCTGCTCTCTATACTATTTTCCAAGGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAAATGATAGGATAAAAGTATCCCTCTCCATGAAAGTTGTCAACCAA
GGCACGGGGAAAGACCTCGATCCCAACAACGTTATCATTGAGCAAGAAGAGAGGCGGAGCGGTCCTTCCCAGGATTATAC
TGGGCAGAAGATCACCCTTGAGGCTGTCCTGAACACTACCTGCAAGAAGTGTGGCTGTAAAGGCCACTTTGCAAAGGATT
GTTTTATGCAACCAGGTGGAACTAAATATTCTCTGATACCTGATGAAGAGGAGGAGAAGCAAGAGGCAAAGTCAGCAGAG
TTTGAGAAGCCTGACCCCACGAAGAATTCTTCTAGAAAAAGAAAGAAGGAAAAGAAGAAAAAGAAACATAGAGAAAGGAA
GTCATCTGACTCTGATAGCTCAGACTCTGAGAGTGATACAGGCAAGAGGGCAAGGCATGCATCAAAAGACAGCAAAGCAG
TGAAGAAGAAGAAAAAGAAGAAGAAGCACAAGAAGAAACATAAGGAGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 11 .47 RPM
SRP012922_cerebellum 40 .14 RPM
SRP012922_heart 11 .83 RPM
SRP012922_kidney 14 .24 RPM
SRP012922_liver 3 .41 RPM
SRP012922_lung 28 .25 RPM
SRP012922_quadricep_muscle 6 .92 RPM
SRP012922_spleen 22 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017710 ortholog_one2many 1 retrogene
retro_amel_1501,
Bos taurus ENSBTAG00000016818 possible_ortholog 2 retrogenes
retro_btau_168, retro_btau_273,
Canis familiaris ENSCAFG00000011131 possible_ortholog 2 retrogenes
retro_cfam_485, retro_cfam_835,
Dipodomys ordii ENSDORG00000004128 ortholog_one2one 1 retrogene
retro_dord_200,
Echinops telfairi ENSETEG00000007421 ortholog_one2one 1 retrogene
retro_etel_1280,
Loxodonta africana ENSLAFG00000015364 ortholog_one2one 1 retrogene
retro_lafr_534,
Myotis lucifugus ENSMLUG00000000594 ortholog_one2one 1 retrogene
retro_mluc_2176,
Monodelphis domestica ENSMODG00000017082 ortholog_one2many 1 retrogene
retro_mdom_252,
Mustela putorius furo ENSMPUG00000015442 ortholog_one2one 1 retrogene
retro_mputfur_680,
Mus musculus ENSMUSG00000028772 ortholog_one2one 1 retrogene
retro_mmus_2150,
Otolemur garnettii ENSOGAG00000013749 ortholog_one2one 1 retrogene
retro_ogar_1225,
Sorex araneus ENSSARG00000007944 ortholog_one2one 1 retrogene
retro_sara_691,
Ictidomys tridecemlineatus ENSSTOG00000003825 ortholog_one2one 1 retrogene
retro_itri_405,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_2548 56.30 51.09
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Download FASTA sequences of all ENSDNOG00000000509 retrocopies