Parental gene:

Pabpn1, ENSMUSG00000022194

Aliases:None
Description:poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158]
Organism:Mouse (Mus musculus)
Coordinates:14:54892499..54898169(+)


>ENSMUSG00000022194
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGCGGCGCCATCT
TGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGACCCGGGGGGCGCAGGGGACTACGGGAACGGCCTGGAGTCTGAGG
AGCTGGAGCCTGGGGAGCTGCTGCCGGAGCCCGAGCCCGAAGAGGAGCCGCCCCGGCCCCGCGCCCCTCCGGGAGCTCCG
GGTCCTGGGCCCGGCTCGGGAGCCCCCGGCAGTCAGGAGGAGGAGGAAGAGCCGGGACTGGTTGAGGCCGACCCCGGCGA
CGGCGCCATTGAGGACCCGGAGCTAGAAGCGATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAGGCTGAGAAGCTAAAGG
AGCTACAAAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCCCCAGGCAATGCTGGCCCAGTGATCATGTCTCTTGAG
GAGAAGATGGAGGCTGATGCCCGCTCTATCTACGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGAGCTGGAAGCCCA
TTTTCATGGCTGTGGTTCAGTCAACCGTGTTACTATACTCTGTGACAAATTTAGTGGCCATCCCAAAGGGTTTGCATATA
TAGAGTTCTCGGACAAAGAGTCAGTGAGGACGTCCCTGGCCTTAGATGAGTCCCTGTTCAGAGGAAGACAAATCAAGGTG
ATTCCCAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTTCCCGCGCTCCCGATACCGTGCCCGGACTAC
CAACTACAACAGCTCCCGATCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGAATCTACAGGGGCCGGGCTA
GAGCGACATCATGGTATTCCCCTTACTAA

Library Parental gene expression (RPM)
SRP007412_brain 36 .89 RPM
SRP007412_cerebellum 36 .39 RPM
SRP007412_heart 9 .87 RPM
SRP007412_kidney 20 .33 RPM
SRP007412_liver 12 .07 RPM
SRP007412_testis 31 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006884 possible_ortholog 1 retrogene
retro_btau_693,
Callithrix jacchus ENSCJAG00000007960 possible_ortholog 4 retrogenes
retro_cjac_1263, retro_cjac_2291, retro_cjac_3278, retro_cjac_3836,
Dipodomys ordii ENSDORG00000002873 possible_ortholog 1 retrogene
retro_dord_606,
Homo sapiens ENSG00000100836 possible_ortholog 1 retrogene
retro_hsap_4855,
Gorilla gorilla ENSGGOG00000022683 possible_ortholog 2 retrogenes
retro_ggor_1454, retro_ggor_3030,
Loxodonta africana ENSLAFG00000031227 possible_ortholog 2 retrogenes
retro_lafr_1031, retro_lafr_233,
Macaca mulatta ENSMMUG00000014747 possible_ortholog 1 retrogene
retro_mmul_2594,
Mustela putorius furo ENSMPUG00000006775 possible_ortholog 1 retrogene
retro_mputfur_496,
Nomascus leucogenys ENSNLEG00000015009 possible_ortholog 2 retrogenes
retro_nleu_2066, retro_nleu_3023,
Oryctolagus cuniculus ENSOCUG00000016174 ortholog_one2many 4 retrogenes
retro_ocun_1185, retro_ocun_1741, retro_ocun_1930, retro_ocun_365,
Otolemur garnettii ENSOGAG00000008710 possible_ortholog 1 retrogene
retro_ogar_797,
Pongo abelii ENSPPYG00000005663 possible_ortholog 2 retrogenes
retro_pabe_1645, retro_pabe_3773,
Pan troglodytes ENSPTRG00000006168 possible_ortholog 2 retrogenes
retro_ptro_1339, retro_ptro_3232,
Sus scrofa ENSSSCG00000002023 possible_ortholog 1 retrogene
retro_sscr_625,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_403 84.00 59.76
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Download FASTA sequences of all ENSMUSG00000022194 retrocopies