Parental gene:

Ube2d1, ENSMUSG00000019927

Aliases:Ube2d1, UBCH5
Description:ubiquitin-conjugating enzyme E2D 1 [Source:MGI Symbol;Acc:MGI:2384911]
Organism:Mouse (Mus musculus)
Coordinates:10:71254979..71285262(-)


>ENSMUSG00000019927
ATGGCGCTGAAGCGGATCCAGAAAGAATTAAGTGATTTACAGCGTGATCCACCTGCCCACTGCTCAGCGGGACCCGTGGG
AGATGACTTGTTCCACTGGCAAGCAACCATCATGGGGCCCCCTGACAGCGCCTATCAAGGTGGAGTCTTCTTCCTCACTG
TCCACTTTCCGACAGACTATCCCTTTAAACCACCAAAGATTGCTTTCACAACAAAAATCTACCACCCAAATATAAACAGC
AACGGGAGTATTTGTCTTGACATCCTGAGGTCCCAGTGGTCGCCCGCTTTGACTGTATCGAAAGTCTTGCTGTCCATATG
CTCGCTGCTCTGTGATCCTAATCCAGACGATCCCTTAGTACCAGATATTGCACAGATCTATAAATCAGACAAAGAAAAAT
ACAACAGGCACGCAAGAGAATGGACTCAGAAATATGCAATGTAA

Library Parental gene expression (RPM)
SRP007412_brain 37 .33 RPM
SRP007412_cerebellum 33 .35 RPM
SRP007412_heart 24 .25 RPM
SRP007412_kidney 17 .19 RPM
SRP007412_liver 5 .98 RPM
SRP007412_testis 3 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020796 ortholog_one2one 5 retrogenes
retro_btau_1174, retro_btau_1314, retro_btau_1773, retro_btau_1774, retro_btau_752,
Choloepus hoffmanni ENSCHOG00000001213 ortholog_one2many 21 retrogenes
retro_chof_1091, retro_chof_1169, retro_chof_1465, retro_chof_1675, retro_chof_1731, retro_chof_2071, retro_chof_2089, retro_chof_2098, retro_chof_2101, retro_chof_2190, retro_chof_2266, retro_chof_2364, retro_chof_2481, retro_chof_2485, retro_chof_2514, retro_chof_2637, retro_chof_619, retro_chof_662, retro_chof_683, retro_chof_728, retro_chof_920,
Dasypus novemcinctus ENSDNOG00000013821 ortholog_one2one 1 retrogene
retro_dnov_537,
Echinops telfairi ENSETEG00000002280 ortholog_one2one 2 retrogenes
retro_etel_1363, retro_etel_1600,
Homo sapiens ENSG00000072401 ortholog_one2one 2 retrogenes
retro_hsap_4723, retro_hsap_4725,
Macropus eugenii ENSMEUG00000007238 ortholog_one2many 1 retrogene
retro_meug_1090,
Microcebus murinus ENSMICG00000010253 ortholog_one2one 1 retrogene
retro_mmur_586,
Myotis lucifugus ENSMLUG00000005710 ortholog_one2one 13 retrogenes
retro_mluc_1019, retro_mluc_1597, retro_mluc_1855, retro_mluc_1914, retro_mluc_1971, retro_mluc_2053, retro_mluc_650, retro_mluc_687, retro_mluc_703, retro_mluc_778, retro_mluc_803, retro_mluc_867, retro_mluc_878,
Mus musculus ENSMUSG00000021774 other_paralog 3 retrogenes
retro_mmus_2493, retro_mmus_2600, retro_mmus_537,
Mus musculus ENSMUSG00000027011 other_paralog 4 retrogenes
retro_mmus_2814, retro_mmus_3123, retro_mmus_3416, retro_mmus_3571,
Mus musculus ENSMUSG00000038965 within_species_paralog 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Mus musculus ENSMUSG00000078578 within_species_paralog 11 retrogenes
retro_mmus_1818, retro_mmus_1895, retro_mmus_1913, retro_mmus_2293, retro_mmus_2635, retro_mmus_2643, retro_mmus_3119, retro_mmus_3636, retro_mmus_850, retro_mmus_875, retro_mmus_923,
Mus musculus ENSMUSG00000091896 within_species_paralog 3 retrogenes
retro_mmus_2267, retro_mmus_27, retro_mmus_629,
Procavia capensis ENSPCAG00000006998 ortholog_one2one 1 retrogene
retro_pcap_117,
Pteropus vampyrus ENSPVAG00000007394 ortholog_one2one 2 retrogenes
retro_pvam_1139, retro_pvam_363,
Sarcophilus harrisii ENSSHAG00000010481 ortholog_one2one 1 retrogene
retro_shar_714,
Tarsius syrichta ENSTSYG00000011229 ortholog_one2one 3 retrogenes
retro_tsyr_1217, retro_tsyr_1430, retro_tsyr_501,
Tursiops truncatus ENSTTRG00000009244 ortholog_one2one 8 retrogenes
retro_ttru_137, retro_ttru_1649, retro_ttru_1670, retro_ttru_1793, retro_ttru_1853, retro_ttru_376, retro_ttru_443, retro_ttru_96,
Vicugna pacos ENSVPAG00000006944 ortholog_one2one 5 retrogenes
retro_vpac_343, retro_vpac_513, retro_vpac_561, retro_vpac_585, retro_vpac_587,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_3405 75.32 51.70
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2. retro_mmus_3406 77.92 51.70
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3. retro_mmus_3407 77.92 51.70
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4. retro_mmus_3409 77.92 51.70
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5. retro_mmus_3430 74.03 51.70
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6. retro_mmus_3432 76.62 51.70
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7. retro_mmus_3434 75.32 51.70
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8. retro_mmus_3435 77.92 51.70
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9. retro_mmus_3436 77.92 51.70
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10. retro_mmus_3563 77.92 51.70
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11. retro_mmus_3564 77.92 51.70
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12. retro_mmus_3565 77.92 51.70
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13. retro_mmus_3566 77.92 51.70
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14. retro_mmus_3567 77.92 51.70
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15. retro_mmus_3587 77.92 51.70
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16. retro_mmus_3589 77.92 51.70
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17. retro_mmus_3590 75.32 51.70
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18. retro_mmus_3591 75.32 51.70
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19. retro_mmus_3592 77.92 51.70
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20. retro_mmus_3593 76.62 51.70
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21. retro_mmus_3594 76.62 51.70
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22. retro_mmus_3595 77.92 51.70
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Download FASTA sequences of all ENSMUSG00000019927 retrocopies