Parental gene:

UBE2D1, ENSBTAG00000020796

Aliases:None
Description:Ubiquitin-conjugating enzyme E2 D1 [Source:UniProtKB/Swiss-Prot;Acc:Q2TA10]
Organism:Cow (Bos taurus)
Coordinates:26:663448..699996(-)


>ENSBTAG00000020796
ATGGCGCTGAAGCGGATTCAGAAAGAGTTAAGTGATCTACAACGTGACCCACCTGCTCACTGTTCGGCTGGACCTGTGGG
AGATGACTTGTTCCACTGGCAAGCAACTATTATGGGGCCTCCTGATAGCGCATATCAAGGTGGAGTCTTCTTTCTCACTG
TACATTTTCCGACAGACTATCCTTTTAAACCACCAAAGATTGCTTTCACAACAAAAATTTACCATCCAAACATAAACAGT
AATGGAAGTATTTGTCTTGATATCCTGAGGTCACAATGGTCACCAGCTCTGACTGTGTCAAAAGTTTTATTGTCCATATG
TTCTCTGCTTTGTGACCCTAATCCAGATGATCCCTTAGTACCAGATATTGCTCAAATCTATAAATCAGACAAAGAAAAAT
ACAACAGACACGCAAGAGAATGGACTCAGAAATATGCAATGTAA

Library Parental gene expression (RPM)
ERP005899_liver 13 .41 RPM
ERP005899_muscle 3 .22 RPM
SRP017611_brain 7 .54 RPM
SRP017611_kidney 9 .96 RPM
SRP017611_liver 2 .49 RPM
SRP030211_testis 3 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003997 within_species_paralog 1 retrogene
retro_btau_1261,
Bos taurus ENSBTAG00000004161 within_species_paralog 6 retrogenes
retro_btau_1421, retro_btau_1602, retro_btau_1739, retro_btau_1775, retro_btau_1851, retro_btau_1852,
Choloepus hoffmanni ENSCHOG00000001213 ortholog_one2many 21 retrogenes
retro_chof_1091, retro_chof_1169, retro_chof_1465, retro_chof_1675, retro_chof_1731, retro_chof_2071, retro_chof_2089, retro_chof_2098, retro_chof_2101, retro_chof_2190, retro_chof_2266, retro_chof_2364, retro_chof_2481, retro_chof_2485, retro_chof_2514, retro_chof_2637, retro_chof_619, retro_chof_662, retro_chof_683, retro_chof_728, retro_chof_920,
Dasypus novemcinctus ENSDNOG00000013821 ortholog_one2one 1 retrogene
retro_dnov_537,
Echinops telfairi ENSETEG00000002280 ortholog_one2one 2 retrogenes
retro_etel_1363, retro_etel_1600,
Homo sapiens ENSG00000072401 ortholog_one2one 2 retrogenes
retro_hsap_4723, retro_hsap_4725,
Macropus eugenii ENSMEUG00000007238 ortholog_one2many 1 retrogene
retro_meug_1090,
Microcebus murinus ENSMICG00000010253 ortholog_one2one 1 retrogene
retro_mmur_586,
Myotis lucifugus ENSMLUG00000005710 ortholog_one2one 13 retrogenes
retro_mluc_1019, retro_mluc_1597, retro_mluc_1855, retro_mluc_1914, retro_mluc_1971, retro_mluc_2053, retro_mluc_650, retro_mluc_687, retro_mluc_703, retro_mluc_778, retro_mluc_803, retro_mluc_867, retro_mluc_878,
Mus musculus ENSMUSG00000019927 ortholog_one2one 22 retrogenes
retro_mmus_3405, retro_mmus_3406, retro_mmus_3407, retro_mmus_3409, retro_mmus_3430, retro_mmus_3432, retro_mmus_3434, retro_mmus_3435, retro_mmus_3436, retro_mmus_3563, retro_mmus_3564, retro_mmus_3565, retro_mmus_3566, retro_mmus_3567, retro_mmus_3587, retro_mmus_3589, retro_mmus_3590, retro_mmus_3591, retro_mmus_3592, retro_mmus_3593, retro_mmus_3594, retro_mmus_3595,
Procavia capensis ENSPCAG00000006998 ortholog_one2one 1 retrogene
retro_pcap_117,
Pteropus vampyrus ENSPVAG00000007394 ortholog_one2one 2 retrogenes
retro_pvam_1139, retro_pvam_363,
Sarcophilus harrisii ENSSHAG00000010481 ortholog_one2one 1 retrogene
retro_shar_714,
Tarsius syrichta ENSTSYG00000011229 ortholog_one2one 3 retrogenes
retro_tsyr_1217, retro_tsyr_1430, retro_tsyr_501,
Tursiops truncatus ENSTTRG00000009244 ortholog_one2one 8 retrogenes
retro_ttru_137, retro_ttru_1649, retro_ttru_1670, retro_ttru_1793, retro_ttru_1853, retro_ttru_376, retro_ttru_443, retro_ttru_96,
Vicugna pacos ENSVPAG00000006944 ortholog_one2one 5 retrogenes
retro_vpac_343, retro_vpac_513, retro_vpac_561, retro_vpac_585, retro_vpac_587,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_752 87.63 65.31
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2. retro_btau_1174 63.00 67.35
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3. retro_btau_1314 70.67 100.00
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4. retro_btau_1773 55.24 70.07
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5. retro_btau_1774 54.29 70.07
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Download FASTA sequences of all ENSBTAG00000020796 retrocopies