Parental gene:

MMU.9813, ENSMMUG00000020666

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:6:136009146..136034112(+)


>ENSMMUG00000020666
GAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGTTCCATTGGCAAGC
TACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTTCCCAACAGATTACCCCT
TCAAACCACCTAAGGTTGCATTTACGACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATT
CTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTATCCATCTGTTCTCTGTTGTGTGATCCCAATCC
AGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGTACAACAGAATAGCTCGGGAATGGA
CTCAGAAGTATGCGATGTAA

Library Parental gene expression (RPM)
SRP007412_brain 17 .37 RPM
SRP007412_brain_prefrontal_cortex 18 .01 RPM
SRP007412_cerebellum 14 .98 RPM
SRP007412_heart 11 .01 RPM
SRP007412_kidney 11 .15 RPM
SRP007412_liver 7 .80 RPM
SRP007412_testis 49 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002183 ortholog_one2one 1 retrogene
retro_acar_182,
Ailuropoda melanoleuca ENSAMEG00000011216 ortholog_one2one 6 retrogenes
retro_amel_1295, retro_amel_1427, retro_amel_1648, retro_amel_1750, retro_amel_620, retro_amel_995,
Bos taurus ENSBTAG00000004161 ortholog_one2one 6 retrogenes
retro_btau_1421, retro_btau_1602, retro_btau_1739, retro_btau_1775, retro_btau_1851, retro_btau_1852,
Canis familiaris ENSCAFG00000031041 ortholog_one2one 5 retrogenes
retro_cfam_1191, retro_cfam_1439, retro_cfam_1602, retro_cfam_2034, retro_cfam_785,
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Loxodonta africana ENSLAFG00000006878 ortholog_one2one 2 retrogenes
retro_lafr_288, retro_lafr_290,
Macaca mulatta ENSMMUG00000002410 within_species_paralog 5 retrogenes
retro_mmul_1067, retro_mmul_1937, retro_mmul_2514, retro_mmul_2515, retro_mmul_531,
Macaca mulatta ENSMMUG00000008069 other_paralog 2 retrogenes
retro_mmul_1382, retro_mmul_1834,
Monodelphis domestica ENSMODG00000011783 ortholog_one2one 2 retrogenes
retro_mdom_17, retro_mdom_884,
Mustela putorius furo ENSMPUG00000009110 ortholog_one2one 5 retrogenes
retro_mputfur_1263, retro_mputfur_1637, retro_mputfur_263, retro_mputfur_682, retro_mputfur_703,
Mus musculus ENSMUSG00000091896 ortholog_one2one 3 retrogenes
retro_mmus_2267, retro_mmus_27, retro_mmus_629,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Oryctolagus cuniculus ENSOCUG00000029448 ortholog_one2one 10 retrogenes
retro_ocun_1220, retro_ocun_1426, retro_ocun_1536, retro_ocun_1660, retro_ocun_1856, retro_ocun_1941, retro_ocun_261, retro_ocun_467, retro_ocun_887, retro_ocun_988,
Pongo abelii ENSPPYG00000015844 ortholog_one2one 6 retrogenes
retro_pabe_1016, retro_pabe_1164, retro_pabe_1257, retro_pabe_2330, retro_pabe_30, retro_pabe_3670,
Pan troglodytes ENSPTRG00000017303 ortholog_one2one 3 retrogenes
retro_ptro_26, retro_ptro_3141, retro_ptro_341,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Ictidomys tridecemlineatus ENSSTOG00000013481 possible_ortholog 6 retrogenes
retro_itri_1222, retro_itri_1474, retro_itri_1628, retro_itri_463, retro_itri_672, retro_itri_998,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,
Tarsius syrichta ENSTSYG00000005459 ortholog_one2one 1 retrogene
retro_tsyr_1421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1298 53.19 66.19
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2. retro_mmul_2143 60.78 69.78
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3. retro_mmul_2246 67.11 54.68
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Download FASTA sequences of all ENSMMUG00000020666 retrocopies