Parental gene:

PFDN4, ENSMMUG00000017300

Aliases:None
Description:prefoldin subunit 4 [Source:RefSeq peptide;Acc:NP_001253046]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:10256889..10268529(-)


>ENSMMUG00000017300
ATGGCGGCCACCATGAAGAAGGCGGCTGCAGAAGATGTGAATGTTACTTTCGAAGATCAACAAAAGATAAACAAATTTGC
ACGGAATACAAGTAGAATCACAGAGCTGAAGGAAGAAATAGAAGTAAAAAAGAAACAACTCCAAAACCTAGAAGATGCTT
GTGATGACATCATGCTTGCAGACGATGACTGCTTAATGATACCTTATCAAATTGGTGATGTCTTCATTAGCCATTCTCAA
GAAGAAACACAAGAAATGTTAGAAGAAGCAAAGAAAAATTTGCAAGAAGAAATTGATGCCTTAGAATCCAGAGTGGAATC
AATTCAGCGGGTGTTAGCAGATTTGAAAGTTCAGTTGTATGCAAAATTTGGGAGCAACATAAACCTTGAAGCTGATGAAA
GTTAA

Library Parental gene expression (RPM)
SRP007412_brain 10 .08 RPM
SRP007412_brain_prefrontal_cortex 3 .81 RPM
SRP007412_cerebellum 7 .10 RPM
SRP007412_heart 6 .89 RPM
SRP007412_kidney 4 .46 RPM
SRP007412_liver 0 .87 RPM
SRP007412_testis 7 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013164 ortholog_one2one 2 retrogenes
retro_amel_1313, retro_amel_1469,
Bos taurus ENSBTAG00000008812 ortholog_one2many 1 retrogene
retro_btau_585,
Canis familiaris ENSCAFG00000011856 ortholog_one2many 1 retrogene
retro_cfam_60,
Callithrix jacchus ENSCJAG00000002615 ortholog_one2one 3 retrogenes
retro_cjac_1996, retro_cjac_2869, retro_cjac_4114,
Cavia porcellus ENSCPOG00000012478 ortholog_one2one 3 retrogenes
retro_cpor_1417, retro_cpor_1428, retro_cpor_598,
Erinaceus europaeus ENSEEUG00000002733 ortholog_one2one 1 retrogene
retro_eeur_597,
Felis catus ENSFCAG00000013355 ortholog_one2one 2 retrogenes
retro_fcat_1031, retro_fcat_219,
Myotis lucifugus ENSMLUG00000008582 ortholog_one2one 3 retrogenes
retro_mluc_1343, retro_mluc_510, retro_mluc_940,
Mustela putorius furo ENSMPUG00000006173 ortholog_one2one 2 retrogenes
retro_mputfur_664, retro_mputfur_791,
Mus musculus ENSMUSG00000052033 ortholog_one2one 1 retrogene
retro_mmus_2763,
Oryctolagus cuniculus ENSOCUG00000004940 ortholog_one2one 5 retrogenes
retro_ocun_1210, retro_ocun_1432, retro_ocun_1525, retro_ocun_287, retro_ocun_344,
Otolemur garnettii ENSOGAG00000016375 ortholog_one2one 1 retrogene
retro_ogar_2411,
Ochotona princeps ENSOPRG00000005385 ortholog_one2one 5 retrogenes
retro_opri_1006, retro_opri_211, retro_opri_396, retro_opri_425, retro_opri_866,
Oryzias latipes ENSORLG00000019179 ortholog_one2one 1 retrogene
retro_olat_25,
Pongo abelii ENSPPYG00000025840 possible_ortholog 1 retrogene
retro_pabe_187,
Sus scrofa ENSSSCG00000007487 ortholog_one2one 2 retrogenes
retro_sscr_1009, retro_sscr_787,
Ictidomys tridecemlineatus ENSSTOG00000028253 ortholog_one2one 1 retrogene
retro_itri_1565,
Tarsius syrichta ENSTSYG00000008974 ortholog_one2one 4 retrogenes
retro_tsyr_1040, retro_tsyr_1667, retro_tsyr_281, retro_tsyr_702,
Tursiops truncatus ENSTTRG00000003850 ortholog_one2one 3 retrogenes
retro_ttru_103, retro_ttru_861, retro_ttru_898,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1603 79.23 95.52
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2. retro_mmul_2530 82.54 94.03
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Download FASTA sequences of all ENSMMUG00000017300 retrocopies