RetrogeneDB - Parental gene ENSMMUG00000015059 details

                            
>ENSMMUG00000015059
AGGGTGGAGCTGTGCAGTTTTAGCGGGTACAAGATCTACCCCGGACACGGGAGGCGCTACGCCAGGACCGACGGGAAGGT

TTTCCAGTTTCTTAATGCAAAATGCGAGTCGGCGTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCT

ACAGAAGGAAGCACAAAAAGGGTCAGTCGGAAGAAATTCAAAAGAAAAGAACCCGCCGAGCAGTCAAATTCCAGAGGGCC

ATTACTGGTGCATCTCTTGCTGATATAATGGCCAAGAGGAATCAGAAACCTGAAGTTAGAAAGGCTCAACGAGAACAAGC

TATCAGGGCTGCTAAGGAAGCAAAAAAGGCTAAGCAAGCATCTAAAAAGACTGCAATGGCTGCTGCTAAGGCACCTACAA

AGGCAGCACCTAAGCAAAAGATTGTGAAGCCTGTGAAAGTTTCAGCTCCCCGAGTTGGTGGAAAACGCTAA

Library	Parental gene expression (RPM)
SRP007412_brain	14 .45 RPM
SRP007412_brain_prefrontal_cortex	57 .99 RPM
SRP007412_cerebellum	18 .53 RPM
SRP007412_heart	36 .74 RPM
SRP007412_kidney	21 .01 RPM
SRP007412_liver	19 .71 RPM
SRP007412_testis	23 .71 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000003740	ortholog_one2one	3 retrogenes	retro_amel_1042, retro_amel_1089, retro_amel_201,
Bos taurus	ENSBTAG00000013461	possible_ortholog	1 retrogene	retro_btau_1143,
Canis familiaris	ENSCAFG00000009601	ortholog_one2one	4 retrogenes	retro_cfam_1908, retro_cfam_615, retro_cfam_862, retro_cfam_989,
Callithrix jacchus	ENSCJAG00000000496	ortholog_one2one	3 retrogenes	retro_cjac_2544, retro_cjac_2941, retro_cjac_327,
Cavia porcellus	ENSCPOG00000019941	ortholog_one2one	5 retrogenes	retro_cpor_1020, retro_cpor_461, retro_cpor_474, retro_cpor_904, retro_cpor_947,
Dasypus novemcinctus	ENSDNOG00000003194	ortholog_one2many	9 retrogenes	retro_dnov_1209, retro_dnov_1259, retro_dnov_1449, retro_dnov_1643, retro_dnov_2191, retro_dnov_2407, retro_dnov_2537, retro_dnov_523, retro_dnov_657,
Equus caballus	ENSECAG00000024095	ortholog_one2one	1 retrogene	retro_ecab_205,
Erinaceus europaeus	ENSEEUG00000009320	possible_ortholog	3 retrogenes	retro_eeur_505, retro_eeur_534, retro_eeur_621,
Felis catus	ENSFCAG00000003327	ortholog_one2one	1 retrogene	retro_fcat_31,
Homo sapiens	ENSG00000114391	possible_ortholog	8 retrogenes	retro_hsap_1437, retro_hsap_1752, retro_hsap_2418, retro_hsap_2614, retro_hsap_2743, retro_hsap_281, retro_hsap_3583, retro_hsap_4179,
Gorilla gorilla	ENSGGOG00000011609	possible_ortholog	8 retrogenes	retro_ggor_1106, retro_ggor_1504, retro_ggor_1831, retro_ggor_1909, retro_ggor_2252, retro_ggor_2417, retro_ggor_2803, retro_ggor_324,
Loxodonta africana	ENSLAFG00000013804	ortholog_one2one	3 retrogenes	retro_lafr_181, retro_lafr_452, retro_lafr_612,
Macropus eugenii	ENSMEUG00000009177	ortholog_one2many	7 retrogenes	retro_meug_1769, retro_meug_371, retro_meug_385, retro_meug_449, retro_meug_730, retro_meug_759, retro_meug_963,
Myotis lucifugus	ENSMLUG00000017005	ortholog_one2one	4 retrogenes	retro_mluc_1990, retro_mluc_2185, retro_mluc_35, retro_mluc_393,
Monodelphis domestica	ENSMODG00000001916	ortholog_one2many	3 retrogenes	retro_mdom_675, retro_mdom_854, retro_mdom_974,
Mustela putorius furo	ENSMPUG00000011738	ortholog_one2one	3 retrogenes	retro_mputfur_255, retro_mputfur_406, retro_mputfur_914,
Nomascus leucogenys	ENSNLEG00000003276	possible_ortholog	6 retrogenes	retro_nleu_1413, retro_nleu_1790, retro_nleu_1894, retro_nleu_2031, retro_nleu_2815, retro_nleu_2937,
Oryctolagus cuniculus	ENSOCUG00000000791	possible_ortholog	8 retrogenes	retro_ocun_1401, retro_ocun_190, retro_ocun_303, retro_ocun_323, retro_ocun_420, retro_ocun_480, retro_ocun_526, retro_ocun_531,
Otolemur garnettii	ENSOGAG00000013843	ortholog_one2one	8 retrogenes	retro_ogar_1592, retro_ogar_1777, retro_ogar_2086, retro_ogar_2785, retro_ogar_2922, retro_ogar_3356, retro_ogar_677, retro_ogar_838,
Ochotona princeps	ENSOPRG00000004255	possible_ortholog	6 retrogenes	retro_opri_1100, retro_opri_1109, retro_opri_1131, retro_opri_900, retro_opri_918, retro_opri_95,
Procavia capensis	ENSPCAG00000005918	possible_ortholog	1 retrogene	retro_pcap_192,
Pongo abelii	ENSPPYG00000013588	possible_ortholog	6 retrogenes	retro_pabe_1191, retro_pabe_1450, retro_pabe_1782, retro_pabe_2277, retro_pabe_2343, retro_pabe_3419,
Pan troglodytes	ENSPTRG00000015176	possible_ortholog	2 retrogenes	retro_ptro_1214, retro_ptro_85,
Pteropus vampyrus	ENSPVAG00000009889	possible_ortholog	3 retrogenes	retro_pvam_1317, retro_pvam_743, retro_pvam_831,
Rattus norvegicus	ENSRNOG00000001611	possible_ortholog	25 retrogenes	retro_rnor_1244, retro_rnor_1245, retro_rnor_1247, retro_rnor_1248, retro_rnor_1250, retro_rnor_1251, retro_rnor_1252, retro_rnor_1253, retro_rnor_1452, retro_rnor_1643, retro_rnor_1699, retro_rnor_1850, retro_rnor_1851, retro_rnor_1985, retro_rnor_2026, retro_rnor_2134, retro_rnor_2148, retro_rnor_2205, retro_rnor_2214, retro_rnor_2294, retro_rnor_2709, retro_rnor_435, retro_rnor_751, retro_rnor_964, retro_rnor_993,
Sorex araneus	ENSSARG00000007615	possible_ortholog	6 retrogenes	retro_sara_198, retro_sara_204, retro_sara_330, retro_sara_535, retro_sara_574, retro_sara_711,
Sarcophilus harrisii	ENSSHAG00000008226	ortholog_one2many	2 retrogenes	retro_shar_171, retro_shar_264,
Sus scrofa	ENSSSCG00000011952	ortholog_one2one	4 retrogenes	retro_sscr_116, retro_sscr_1218, retro_sscr_669, retro_sscr_932,
Ictidomys tridecemlineatus	ENSSTOG00000014654	ortholog_one2one	2 retrogenes	retro_itri_442, retro_itri_69,
Tupaia belangeri	ENSTBEG00000012044	possible_ortholog	30 retrogenes	retro_tbel_1349, retro_tbel_1429, retro_tbel_1676, retro_tbel_2076, retro_tbel_2248, retro_tbel_2553, retro_tbel_2836, retro_tbel_2853, retro_tbel_2931, retro_tbel_3363, retro_tbel_3507, retro_tbel_3544, retro_tbel_3552, retro_tbel_3557, retro_tbel_3634, retro_tbel_3636, retro_tbel_3664, retro_tbel_4105, retro_tbel_4114, retro_tbel_4139, retro_tbel_4236, retro_tbel_4237, retro_tbel_431, retro_tbel_4677, retro_tbel_569, retro_tbel_607, retro_tbel_678, retro_tbel_700, retro_tbel_73, retro_tbel_779,
Tarsius syrichta	ENSTSYG00000002314	possible_ortholog	4 retrogenes	retro_tsyr_266, retro_tsyr_285, retro_tsyr_401, retro_tsyr_460,
Vicugna pacos	ENSVPAG00000012246	possible_ortholog	3 retrogenes	retro_vpac_49, retro_vpac_520, retro_vpac_597,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmul_37	84.21	73.08	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mmul_560	79.87	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_mmul_609	83.54	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_mmul_823	98.09	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_mmul_1234	59.17	75.64	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_mmul_1711	96.79	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_mmul_1803	99.35	98.72	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_mmul_2263	69.11	78.85	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_mmul_2521	94.27	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMMUG00000015059 retrocopies

Parental gene:	MMU.9654, ENSMMUG00000015059
Aliases:	None
Description:	60S ribosomal protein L24 [Source:RefSeq peptide;Acc:NP_001252897]
Organism:	*Rhesus macaque (Macaca mulatta)*
Coordinates:	2:21870466..21875827(-)

Parental gene:

MMU.9654, ENSMMUG00000015059