Parental gene:

POLR2D, ENSMMUG00000001989

Aliases:None
Description:DNA-directed RNA polymerase II subunit RPB4 [Source:RefSeq peptide;Acc:NP_001254716]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:13:134314374..134323159(-)


>ENSMMUG00000001989
ATGGCAGCAGGTGGCGGCGATCCGCGGGCTGGCGACGTAGAGGAGGACGCCTCACAGCTCATCTTTCCTAAAGAGTTTGA
AACAGCTGAGACACTTCTAAATTCAGAAGTTCATATGCTTCTGGAACATCGAAAGCAACAGAATGAGAGTGCAGAGGATG
AACAGGAACTCTCAGAAGTCTTCATGAAAACATTAAACTACACAGCCCGTTTCAGTCGTTTCAAAAACAGAGAGACCATT
GCCAGTGTTCGTAGCTTGCTACTCCAGAAAAAGCTTCACAAGTTTGAGTTGGCCTGTTTGGCCAACCTTTGCCCAGAGAC
TGCTGAGGAGTCCAAGGCTCTAATCCCAAGCTTGGAGGGACGGTTTGAAGATGAGGAGCTGCAGCAGATTCTTGATGATA
TCCAGACAAAGCGCAGCTTTCAGTATTAA

Library Parental gene expression (RPM)
SRP007412_brain 5 .38 RPM
SRP007412_brain_prefrontal_cortex 5 .24 RPM
SRP007412_cerebellum 3 .62 RPM
SRP007412_heart 3 .24 RPM
SRP007412_kidney 4 .93 RPM
SRP007412_liver 1 .54 RPM
SRP007412_testis 12 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011746 ortholog_one2one 1 retrogene
retro_amel_1020,
Canis familiaris ENSCAFG00000004311 ortholog_one2one 2 retrogenes
retro_cfam_1403, retro_cfam_2188,
Choloepus hoffmanni ENSCHOG00000013850 ortholog_one2one 3 retrogenes
retro_chof_1003, retro_chof_1568, retro_chof_1920,
Dasypus novemcinctus ENSDNOG00000008527 ortholog_one2one 1 retrogene
retro_dnov_734,
Felis catus ENSFCAG00000027816 ortholog_one2one 1 retrogene
retro_fcat_1148,
Gorilla gorilla ENSGGOG00000004723 ortholog_one2one 1 retrogene
retro_ggor_1658,
Monodelphis domestica ENSMODG00000018653 ortholog_one2many 4 retrogenes
retro_mdom_1320, retro_mdom_457, retro_mdom_689, retro_mdom_851,
Mustela putorius furo ENSMPUG00000016685 ortholog_one2one 1 retrogene
retro_mputfur_611,
Mus musculus ENSMUSG00000024258 ortholog_one2one 1 retrogene
retro_mmus_1331,
Oryctolagus cuniculus ENSOCUG00000021449 ortholog_one2many 1 retrogene
retro_ocun_35,
Ochotona princeps ENSOPRG00000005327 ortholog_one2one 2 retrogenes
retro_opri_233, retro_opri_725,
Pongo abelii ENSPPYG00000012759 ortholog_one2one 1 retrogene
retro_pabe_1933,
Pan troglodytes ENSPTRG00000012436 ortholog_one2one 1 retrogene
retro_ptro_1571,
Sorex araneus ENSSARG00000009037 ortholog_one2one 1 retrogene
retro_sara_420,
Sarcophilus harrisii ENSSHAG00000014817 ortholog_one2one 1 retrogene
retro_shar_728,
Ictidomys tridecemlineatus ENSSTOG00000023329 ortholog_one2many 3 retrogenes
retro_itri_1323, retro_itri_145, retro_itri_600,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1011 79.02 100.00
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Download FASTA sequences of all ENSMMUG00000001989 retrocopies