Parental gene:

MMU.3162, ENSMMUG00000001940

Aliases:None
Description:nucleoside diphosphate kinase A [Source:RefSeq peptide;Acc:NP_001191444]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:16:35388510..35407009(+)


>ENSMMUG00000001940
ATGGCCAACTGTGAGCGGACCTTCATTGCCATCAAACCAGATGGGGTCCAGCGGGGTCTTGTCGGAGAGATTATCAAGCG
TTTTGAGCAGAAAGGATTCCGCCTTGTTGGTCTGAAATTCATGCAAGCCTCTGAAGACCTTCTCAAGGAACACTACATTG
ACCTGAAGGACCGTCCGTTCTTTGCCGGCCTGGTGAAATACATGCACTCAGGGCCGGTAGTTGCCATGGTCTGGGAGGGG
CTGAATGTGGTGAAGACAGGCCGAGTCATGCTCGGGGAGACCAACCCTGCGGACTCCAAGCCTGGGACCATCCGTGGCGA
CTTCTGCATACAAGTTGGCAGGACCATGGCCAACCTCGAGCGCACGTTCATCGCCATCAAGCCGGACGGCGTGCAGCGCG
GCCTGGTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGGTTCCGCCTCGTGGCCATGAAGTTCCTCCGGGCCTCTGAG
GAACACCTGAAGCAGCACTACGTTGACCTGAAAGACCGCCCGTTCTTCCCCGGGCTGGTGAAGTACATGAACTCGGGGCC
GGTTGTGGCCATGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGTGATGCTTGGGGAGACCAATCCAGCAGATT
CTAAGCCAGGCACCATTCGTGGGGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGACTCAGTAAAAAGT
GCTGAAAAAGAAATCAGCCTATGGTTTAAGCCTGAAGAACTGGTTGACTACAAGTCTTGTGCTCATGACTGGGTCTATGA
ATAA

Library Parental gene expression (RPM)
SRP007412_brain 110 .03 RPM
SRP007412_brain_prefrontal_cortex 170 .24 RPM
SRP007412_cerebellum 60 .57 RPM
SRP007412_heart 158 .40 RPM
SRP007412_kidney 159 .03 RPM
SRP007412_liver 140 .72 RPM
SRP007412_testis 30 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008022 possible_ortholog 3 retrogenes
retro_amel_1573, retro_amel_390, retro_amel_538,
Bos taurus ENSBTAG00000047186 possible_ortholog 1 retrogene
retro_btau_1329,
Callithrix jacchus ENSCJAG00000018395 ortholog_one2one 5 retrogenes
retro_cjac_1765, retro_cjac_2517, retro_cjac_2642, retro_cjac_3940, retro_cjac_471,
Equus caballus ENSECAG00000021658 possible_ortholog 1 retrogene
retro_ecab_404,
Erinaceus europaeus ENSEEUG00000003783 possible_ortholog 2 retrogenes
retro_eeur_156, retro_eeur_5,
Felis catus ENSFCAG00000006742 possible_ortholog 5 retrogenes
retro_fcat_1083, retro_fcat_1117, retro_fcat_1475, retro_fcat_216, retro_fcat_663,
Homo sapiens ENSG00000011052 ortholog_one2one 1 retrogene
retro_hsap_1063,
Loxodonta africana ENSLAFG00000007784 possible_ortholog 1 retrogene
retro_lafr_636,
Myotis lucifugus ENSMLUG00000016929 possible_ortholog 3 retrogenes
retro_mluc_1422, retro_mluc_1882, retro_mluc_637,
Macaca mulatta ENSMMUG00000000612 within_species_paralog 1 retrogene
retro_mmul_1221,
Monodelphis domestica ENSMODG00000012580 possible_ortholog 1 retrogene
retro_mdom_1811,
Mustela putorius furo ENSMPUG00000015573 possible_ortholog 4 retrogenes
retro_mputfur_1236, retro_mputfur_1590, retro_mputfur_327, retro_mputfur_912,
Rattus norvegicus ENSRNOG00000002671 possible_ortholog 8 retrogenes
retro_rnor_1129, retro_rnor_1610, retro_rnor_1708, retro_rnor_1784, retro_rnor_1966, retro_rnor_2646, retro_rnor_2951, retro_rnor_628,
Sarcophilus harrisii ENSSHAG00000014470 ortholog_one2one 3 retrogenes
retro_shar_130, retro_shar_554, retro_shar_781,
Sus scrofa ENSSSCG00000017591 possible_ortholog 1 retrogene
retro_sscr_854,
Tupaia belangeri ENSTBEG00000013053 ortholog_one2many 6 retrogenes
retro_tbel_1271, retro_tbel_1386, retro_tbel_2497, retro_tbel_294, retro_tbel_4620, retro_tbel_820,
Tursiops truncatus ENSTTRG00000007433 possible_ortholog 1 retrogene
retro_ttru_1821,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1827 92.81 100.00
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Download FASTA sequences of all ENSMMUG00000001940 retrocopies