Parental gene:

RAN, ENSGGOG00000015340

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:12:130952188..130956374(+)


>ENSGGOG00000015340
ATGGCTGCGCAGGGAGAGCCCCAGGTCCAGTTCAAACTTGTATTGGTTGGTGATGGTGGTACTGGAAAAACGACCTTCGT
GAAACGTCATTTGACTGGTGAATTTGAGAAGAAGTATGTAGCCACCTTGGGTGTTGAGGTTCATCCCCTAGTGTTCCACA
CCAACAGAGGGCCTATTAAGTTCAATGTATGGGACACAGCCGGCCAGGAGAAATTCGGTGGACTGAGAGATGGCTATTAT
ATCCAAGCCCAGTGTGCCATCATAATGTTTGATGTAACATCGAGAGTTACTTACAAGAATGTGCCTAACTGGCATAGAGA
TCTGGTACGAGTGTGTGAAAACATCCCCATTGTGTTGTGTGGCAACAAAGTGGATATTAAGGACAGGAAAGTGAAGGCGA
AATCCATTGTCTTCCACCGAAAGAAGAATCTTCAGTACTACGACATTTCTGCCAAAAGTAACTACAACTTTGAAAAGCCC
TTCCTCTGGCTTGCTAGGAAGCTCATTGGAGACCCTAACTTGGAATTTGTTGCCATGCCTGCTCTCGCCCCACCAGAAGT
TGTCATGGACCCAGCTTTGGCAGCACAGTATGAGCACGACTTAGAGGTTGCTCAGACAACTGCTCTCCCGGATGAGGATG
ATGACCTGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 180 .12 RPM
SRP007412_cerebellum 90 .10 RPM
SRP007412_heart 35 .24 RPM
SRP007412_kidney 108 .89 RPM
SRP007412_liver 63 .41 RPM
SRP007412_testis 375 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004222 possible_ortholog 4 retrogenes
retro_amel_1119, retro_amel_1625, retro_amel_1631, retro_amel_700,
Canis familiaris ENSCAFG00000006670 possible_ortholog 6 retrogenes
retro_cfam_1406, retro_cfam_1584, retro_cfam_1604, retro_cfam_2058, retro_cfam_426, retro_cfam_899,
Callithrix jacchus ENSCJAG00000003927 ortholog_one2one 8 retrogenes
retro_cjac_1558, retro_cjac_1844, retro_cjac_2509, retro_cjac_2952, retro_cjac_3071, retro_cjac_3107, retro_cjac_4222, retro_cjac_492,
Dasypus novemcinctus ENSDNOG00000009230 possible_ortholog 12 retrogenes
retro_dnov_1154, retro_dnov_1269, retro_dnov_1485, retro_dnov_1543, retro_dnov_1585, retro_dnov_1795, retro_dnov_1924, retro_dnov_1945, retro_dnov_2142, retro_dnov_2189, retro_dnov_2613, retro_dnov_991,
Equus caballus ENSECAG00000020532 possible_ortholog 3 retrogenes
retro_ecab_195, retro_ecab_591, retro_ecab_680,
Echinops telfairi ENSETEG00000011875 possible_ortholog 18 retrogenes
retro_etel_1051, retro_etel_1161, retro_etel_1351, retro_etel_1365, retro_etel_1584, retro_etel_1673, retro_etel_1878, retro_etel_1896, retro_etel_1915, retro_etel_2141, retro_etel_2150, retro_etel_2189, retro_etel_294, retro_etel_383, retro_etel_409, retro_etel_412, retro_etel_514, retro_etel_813,
Felis catus ENSFCAG00000027375 possible_ortholog 6 retrogenes
retro_fcat_1097, retro_fcat_1230, retro_fcat_1297, retro_fcat_1586, retro_fcat_1904, retro_fcat_269,
Homo sapiens ENSG00000132341 ortholog_one2one 3 retrogenes
retro_hsap_3126, retro_hsap_3446, retro_hsap_4908,
Loxodonta africana ENSLAFG00000017673 ortholog_one2one 1 retrogene
retro_lafr_1253,
Microcebus murinus ENSMICG00000000653 possible_ortholog 4 retrogenes
retro_mmur_1270, retro_mmur_669, retro_mmur_791, retro_mmur_866,
Macaca mulatta ENSMMUG00000020927 ortholog_one2one 2 retrogenes
retro_mmul_1990, retro_mmul_2641,
Monodelphis domestica ENSMODG00000015601 ortholog_many2many 8 retrogenes
retro_mdom_100, retro_mdom_1718, retro_mdom_1990, retro_mdom_543, retro_mdom_580, retro_mdom_806, retro_mdom_814, retro_mdom_969,
Mustela putorius furo ENSMPUG00000004044 possible_ortholog 6 retrogenes
retro_mputfur_1190, retro_mputfur_1523, retro_mputfur_228, retro_mputfur_755, retro_mputfur_784, retro_mputfur_899,
Mus musculus ENSMUSG00000029430 ortholog_one2one 4 retrogenes
retro_mmus_1653, retro_mmus_182, retro_mmus_2029, retro_mmus_265,
Nomascus leucogenys ENSNLEG00000008282 ortholog_one2many 4 retrogenes
retro_nleu_1565, retro_nleu_2303, retro_nleu_2353, retro_nleu_775,
Ornithorhynchus anatinus ENSOANG00000006447 ortholog_one2many 1 retrogene
retro_oana_62,
Oryctolagus cuniculus ENSOCUG00000026506 possible_ortholog 2 retrogenes
retro_ocun_1139, retro_ocun_958,
Otolemur garnettii ENSOGAG00000025046 ortholog_one2one 8 retrogenes
retro_ogar_1482, retro_ogar_1611, retro_ogar_2058, retro_ogar_2560, retro_ogar_2692, retro_ogar_2810, retro_ogar_377, retro_ogar_497,
Ochotona princeps ENSOPRG00000002629 possible_ortholog 7 retrogenes
retro_opri_1062, retro_opri_1227, retro_opri_514, retro_opri_622, retro_opri_647, retro_opri_74, retro_opri_97,
Pongo abelii ENSPPYG00000005124 ortholog_one2one 3 retrogenes
retro_pabe_2582, retro_pabe_2853, retro_pabe_3815,
Pan troglodytes ENSPTRG00000005636 ortholog_one2one 4 retrogenes
retro_ptro_1762, retro_ptro_2115, retro_ptro_2338, retro_ptro_3273,
Pteropus vampyrus ENSPVAG00000014742 possible_ortholog 15 retrogenes
retro_pvam_1023, retro_pvam_1049, retro_pvam_1328, retro_pvam_365, retro_pvam_485, retro_pvam_597, retro_pvam_61, retro_pvam_746, retro_pvam_770, retro_pvam_863, retro_pvam_933, retro_pvam_934, retro_pvam_935, retro_pvam_948, retro_pvam_968,
Rattus norvegicus ENSRNOG00000000938 ortholog_one2many 3 retrogenes
retro_rnor_138, retro_rnor_410, retro_rnor_917,
Sarcophilus harrisii ENSSHAG00000018018 ortholog_one2many 1 retrogene
retro_shar_538,
Sus scrofa ENSSSCG00000009746 ortholog_one2one 3 retrogenes
retro_sscr_1136, retro_sscr_194, retro_sscr_771,
Ictidomys tridecemlineatus ENSSTOG00000003992 possible_ortholog 3 retrogenes
retro_itri_1009, retro_itri_1442, retro_itri_723,
Tursiops truncatus ENSTTRG00000012732 ortholog_one2one 6 retrogenes
retro_ttru_1481, retro_ttru_204, retro_ttru_387, retro_ttru_439, retro_ttru_792, retro_ttru_892,
Vicugna pacos ENSVPAG00000008880 ortholog_one2many 3 retrogenes
retro_vpac_436, retro_vpac_589, retro_vpac_85,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_2142 81.67 55.56
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2. retro_ggor_2328 88.70 53.24
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3. retro_ggor_2556 79.61 69.91
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4. retro_ggor_3066 79.61 69.91
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Download FASTA sequences of all ENSGGOG00000015340 retrocopies