RetrogeneDB - Parental gene ENSCJAG00000003927 details

                            
>ENSCJAG00000003927
AACGCCGCGATGGCTGCGCAGGGAGAGCCCCAGGTCCAGTTTAAACTTGTATTGGTTGGTGACGGTGGTACCGGAAAAAC

GACCTTCGTGAAACGTCATCTGACTGGTGAATTTGAGAAGAAGTATGTAGCCACCTTGGGTGTTGAGGTTCATCCCCTGG

TGTTCCACACTAACAGAGGACCTATTAAGTTCAATGTGTGGGACACGGCCGGCCAGGAGAAATTCGGCGGACTGAGAGAT

GGCTACTATATCCAAGCCCAGTGTGCCATCATAATGTTCGATGTAACATCCAGAGTTACTTACAAGAACGTGCCTAACTG

GCATAGAGATCTGGTGCGAGTGTGTGAGAACATCCCCATCGTGTTATGTGGCAACAAAGTGGACATTAAGGACAGGAAAG

TGAAGGCAAAATCCATTGTCTTCCACCGAAAGAAGAATCTTCAGTACTACGACATTTCTGCCAAAAGTAACTACAACTTT

GAAAAGCCCTTCCTCTGGCTTGCTAGGAAGCTCATTGGAGACCCTAATTTGGAATTTGTTGCCATGCCTGCTCTTGCCCC

ACCGGAGGTTGTCATGGACCCAGCTTTGGCAGCGCAATATGAGCACGACTTAGAGGTTGCTCAAACAACTGCTCTCCCGG

ATGAGGATGATGACCTGTGA

Library	Parental gene expression (RPM)
SRP051959_colon	36 .54 RPM
SRP051959_heart	22 .59 RPM
SRP051959_kidney	28 .46 RPM
SRP051959_liver	30 .19 RPM
SRP051959_lung	25 .74 RPM
SRP051959_lymph_node	33 .06 RPM
SRP051959_skeletal_muscle	29 .68 RPM
SRP051959_spleen	28 .53 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000004222	possible_ortholog	4 retrogenes	retro_amel_1119, retro_amel_1625, retro_amel_1631, retro_amel_700,
Canis familiaris	ENSCAFG00000006670	possible_ortholog	6 retrogenes	retro_cfam_1406, retro_cfam_1584, retro_cfam_1604, retro_cfam_2058, retro_cfam_426, retro_cfam_899,
Dasypus novemcinctus	ENSDNOG00000009230	possible_ortholog	12 retrogenes	retro_dnov_1154, retro_dnov_1269, retro_dnov_1485, retro_dnov_1543, retro_dnov_1585, retro_dnov_1795, retro_dnov_1924, retro_dnov_1945, retro_dnov_2142, retro_dnov_2189, retro_dnov_2613, retro_dnov_991,
Equus caballus	ENSECAG00000020532	possible_ortholog	3 retrogenes	retro_ecab_195, retro_ecab_591, retro_ecab_680,
Echinops telfairi	ENSETEG00000011875	possible_ortholog	18 retrogenes	retro_etel_1051, retro_etel_1161, retro_etel_1351, retro_etel_1365, retro_etel_1584, retro_etel_1673, retro_etel_1878, retro_etel_1896, retro_etel_1915, retro_etel_2141, retro_etel_2150, retro_etel_2189, retro_etel_294, retro_etel_383, retro_etel_409, retro_etel_412, retro_etel_514, retro_etel_813,
Felis catus	ENSFCAG00000027375	possible_ortholog	6 retrogenes	retro_fcat_1097, retro_fcat_1230, retro_fcat_1297, retro_fcat_1586, retro_fcat_1904, retro_fcat_269,
Homo sapiens	ENSG00000132341	ortholog_one2one	3 retrogenes	retro_hsap_3126, retro_hsap_3446, retro_hsap_4908,
Gorilla gorilla	ENSGGOG00000015340	ortholog_one2one	4 retrogenes	retro_ggor_2142, retro_ggor_2328, retro_ggor_2556, retro_ggor_3066,
Loxodonta africana	ENSLAFG00000017673	ortholog_one2one	1 retrogene	retro_lafr_1253,
Microcebus murinus	ENSMICG00000000653	possible_ortholog	4 retrogenes	retro_mmur_1270, retro_mmur_669, retro_mmur_791, retro_mmur_866,
Macaca mulatta	ENSMMUG00000020927	ortholog_one2one	2 retrogenes	retro_mmul_1990, retro_mmul_2641,
Monodelphis domestica	ENSMODG00000015601	ortholog_many2many	8 retrogenes	retro_mdom_100, retro_mdom_1718, retro_mdom_1990, retro_mdom_543, retro_mdom_580, retro_mdom_806, retro_mdom_814, retro_mdom_969,
Mustela putorius furo	ENSMPUG00000004044	possible_ortholog	6 retrogenes	retro_mputfur_1190, retro_mputfur_1523, retro_mputfur_228, retro_mputfur_755, retro_mputfur_784, retro_mputfur_899,
Mus musculus	ENSMUSG00000029430	ortholog_one2one	4 retrogenes	retro_mmus_1653, retro_mmus_182, retro_mmus_2029, retro_mmus_265,
Nomascus leucogenys	ENSNLEG00000008282	ortholog_one2many	4 retrogenes	retro_nleu_1565, retro_nleu_2303, retro_nleu_2353, retro_nleu_775,
Ornithorhynchus anatinus	ENSOANG00000006447	ortholog_one2many	1 retrogene	retro_oana_62,
Oryctolagus cuniculus	ENSOCUG00000026506	possible_ortholog	2 retrogenes	retro_ocun_1139, retro_ocun_958,
Otolemur garnettii	ENSOGAG00000025046	ortholog_one2one	8 retrogenes	retro_ogar_1482, retro_ogar_1611, retro_ogar_2058, retro_ogar_2560, retro_ogar_2692, retro_ogar_2810, retro_ogar_377, retro_ogar_497,
Ochotona princeps	ENSOPRG00000002629	possible_ortholog	7 retrogenes	retro_opri_1062, retro_opri_1227, retro_opri_514, retro_opri_622, retro_opri_647, retro_opri_74, retro_opri_97,
Pongo abelii	ENSPPYG00000005124	ortholog_one2one	3 retrogenes	retro_pabe_2582, retro_pabe_2853, retro_pabe_3815,
Pan troglodytes	ENSPTRG00000005636	ortholog_one2one	4 retrogenes	retro_ptro_1762, retro_ptro_2115, retro_ptro_2338, retro_ptro_3273,
Pteropus vampyrus	ENSPVAG00000014742	possible_ortholog	15 retrogenes	retro_pvam_1023, retro_pvam_1049, retro_pvam_1328, retro_pvam_365, retro_pvam_485, retro_pvam_597, retro_pvam_61, retro_pvam_746, retro_pvam_770, retro_pvam_863, retro_pvam_933, retro_pvam_934, retro_pvam_935, retro_pvam_948, retro_pvam_968,
Rattus norvegicus	ENSRNOG00000000938	ortholog_one2many	3 retrogenes	retro_rnor_138, retro_rnor_410, retro_rnor_917,
Sarcophilus harrisii	ENSSHAG00000018018	ortholog_one2many	1 retrogene	retro_shar_538,
Sus scrofa	ENSSSCG00000009746	ortholog_one2one	3 retrogenes	retro_sscr_1136, retro_sscr_194, retro_sscr_771,
Ictidomys tridecemlineatus	ENSSTOG00000003992	possible_ortholog	3 retrogenes	retro_itri_1009, retro_itri_1442, retro_itri_723,
Tursiops truncatus	ENSTTRG00000012732	ortholog_one2one	6 retrogenes	retro_ttru_1481, retro_ttru_204, retro_ttru_387, retro_ttru_439, retro_ttru_792, retro_ttru_892,
Vicugna pacos	ENSVPAG00000008880	ortholog_one2many	3 retrogenes	retro_vpac_436, retro_vpac_589, retro_vpac_85,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_492	77.47	80.37	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_1558	61.61	86.72	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_1844	89.91	99.54	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_2509	72.32	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_2952	77.37	61.19	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_3071	92.50	54.79	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_3107	86.49	50.68	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_4222	76.67	68.04	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000003927 retrocopies

Parental gene:	RAN, ENSCJAG00000003927
Aliases:	None
Description:	RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	9:121945354..121950983(+)

Parental gene:

RAN, ENSCJAG00000003927