Parental gene:

EIF4A1, ENSG00000161960

Aliases:EIF4A1, DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I
Description:eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282]
Organism:Human (Homo sapiens)
Coordinates:17:7476023..7482323(+)


>ENSG00000161960
ATGTCTGCGAGCCAGGATTCCCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGCGTCATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCGTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGATGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAATTAGATCTAAAAGCCACCCAGGCCTTGGTCCTAGC
ACCCACTCGAGAATTGGCTCAGCAGATACAGAAGGTGGTCATGGCACTAGGAGACTACATGGGCGCCTCCTGTCACGCCT
GTATCGGGGGCACCAACGTGCGTGCTGAGGTGCAGAAACTGCAGATGGAAGCTCCCCACATCATCGTGGGTACCCCTGGC
CGTGTGTTTGATATGCTTAACCGGAGATACCTGTCCCCCAAATACATCAAGATGTTTGTACTGGATGAAGCTGACGAAAT
GTTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGCTGTCAG
CCACAATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAGGAAGAG
TTGACCCTGGAGGGTATCCGCCAGTTCTACATCAACGTGGAACGAGAGGAGTGGAAGCTGGACACACTATGTGACTTGTA
TGAAACCCTGACCATCACCCAGGCAGTCATCTTCATCAACACCCGGAGGAAGGTGGACTGGCTCACCGAGAAGATGCATG
CTCGAGATTTCACTGTATCCGCCATGCATGGAGATATGGACCAAAAGGAACGAGACGTGATTATGAGGGAGTTTCGTTCT
GGCTCTAGCAGAGTTTTGATTACCACTGACCTGCTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGAGGTGGACGGTTTGGCCGTAAAGGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAGAGGACTCTTCGAGACATTGAGACCTTCTACAACACCTCCATTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATCTGA

Library Parental gene expression (RPM)
bodymap2_adipose 4 .06 RPM
bodymap2_adrenal 24 .05 RPM
bodymap2_brain 3 .59 RPM
bodymap2_breast 7 .61 RPM
bodymap2_colon 3 .27 RPM
bodymap2_heart 1 .90 RPM
bodymap2_kidney 4 .74 RPM
bodymap2_liver 1 .94 RPM
bodymap2_lung 11 .81 RPM
bodymap2_lymph_node 10 .49 RPM
bodymap2_ovary 12 .09 RPM
bodymap2_prostate 5 .92 RPM
bodymap2_skeletal_muscle 1 .07 RPM
bodymap2_testis 1 .85 RPM
bodymap2_thyroid 6 .67 RPM
bodymap2_white_blood_cells 3 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000004900 ortholog_one2one 1 retrogene
retro_cpor_1088,
Erinaceus europaeus ENSEEUG00000003581 ortholog_one2one 1 retrogene
retro_eeur_610,
Felis catus ENSFCAG00000024897 ortholog_one2one 1 retrogene
retro_fcat_370,
Homo sapiens ENSG00000156976 within_species_paralog 2 retrogenes
retro_hsap_593, retro_hsap_878,
Gorilla gorilla ENSGGOG00000024702 ortholog_one2one 8 retrogenes
retro_ggor_1321, retro_ggor_1572, retro_ggor_3015, retro_ggor_537, retro_ggor_798, retro_ggor_920, retro_ggor_983, retro_ggor_998,
Macropus eugenii ENSMEUG00000010780 ortholog_one2one 2 retrogenes
retro_meug_158, retro_meug_179,
Myotis lucifugus ENSMLUG00000003415 ortholog_one2one 3 retrogenes
retro_mluc_1047, retro_mluc_1229, retro_mluc_1805,
Macaca mulatta ENSMMUG00000013499 ortholog_one2one 1 retrogene
retro_mmul_1280,
Monodelphis domestica ENSMODG00000007090 ortholog_one2one 3 retrogenes
retro_mdom_1282, retro_mdom_326, retro_mdom_711,
Mus musculus ENSMUSG00000059796 ortholog_one2one 7 retrogenes
retro_mmus_1810, retro_mmus_1853, retro_mmus_2320, retro_mmus_2473, retro_mmus_3122, retro_mmus_325, retro_mmus_527,
Nomascus leucogenys ENSNLEG00000009547 ortholog_one2one 7 retrogenes
retro_nleu_2109, retro_nleu_2117, retro_nleu_230, retro_nleu_2470, retro_nleu_2769, retro_nleu_440, retro_nleu_701,
Pan troglodytes ENSPTRG00000008694 ortholog_one2one 10 retrogenes
retro_ptro_1201, retro_ptro_1465, retro_ptro_2954, retro_ptro_3112, retro_ptro_3247, retro_ptro_450, retro_ptro_750, retro_ptro_810, retro_ptro_862, retro_ptro_870,
Rattus norvegicus ENSRNOG00000030628 ortholog_one2one 3 retrogenes
retro_rnor_1059, retro_rnor_2213, retro_rnor_2306,
Sorex araneus ENSSARG00000006017 ortholog_one2one 7 retrogenes
retro_sara_224, retro_sara_383, retro_sara_461, retro_sara_567, retro_sara_6, retro_sara_605, retro_sara_89,
Ictidomys tridecemlineatus ENSSTOG00000024814 ortholog_one2one 1 retrogene
retro_itri_610,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_610 83.33 82.11
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2. retro_hsap_1004 90.77 79.56
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3. retro_hsap_1182 88.86 99.51
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4. retro_hsap_1252 86.17 99.26
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5. retro_hsap_1270 85.16 63.05
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6. retro_hsap_1796 86.54 59.37
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7. retro_hsap_2520 79.49 90.32
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8. retro_hsap_4836 74.55 68.72
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9. retro_hsap_4873 95.09 100.00
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10. retro_hsap_4931 93.37 100.00
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Download FASTA sequences of all ENSG00000161960 retrocopies