Parental gene:

ST13, ENSG00000100380

Aliases:ST13, AAG2, FAM10A1, FAM10A4, HIP, HOP, HSPABP, HSPABP1, P48, PRO0786, SNC6
Description:suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]
Organism:Human (Homo sapiens)
Coordinates:22:41220538..41253026(-)


>ENSG00000100380
ATGGACCCCCGCAAAGTGAACGAGCTTCGGGCCTTTGTGAAAATGTGTAAGCAGGATCCGAGCGTTCTGCACACCGAGGA
AATGCGCTTCCTGAGGGAGTGGGTGGAGAGCATGGGTGGTAAAGTACCACCTGCTACTCAGAAAGCTAAATCAGAAGAAA
ATACCAAGGAAGAAAAACCTGATAGTAAGAAGGTGGAGGAAGACTTAAAGGCAGACGAACCATCAAGTGAGGAAAGTGAT
CTAGAAATTGATAAAGAAGGTGTGATTGAACCAGACACTGATGCTCCTCAAGAAATGGGAGATGAAAATGCGGAGATAAC
GGAGGAGATGATGGATCAGGCAAATGATAAAAAAGTGGCTGCTATTGAAGCCCTAAATGATGGTGAACTCCAGAAAGCCA
TTGACTTATTCACAGATGCCATCAAGCTGAATCCTCGCTTGGCCATTTTGTATGCCAAGAGGGCCAGTGTCTTCGTCAAA
TTACAGAAGCCAAATGCTGCCATCCGAGACTGTGACAGAGCCATTGAAATAAATCCTGATTCAGCTCAGCCTTACAAGTG
GCGGGGGAAAGCACACAGACTTCTAGGCCACTGGGAAGAAGCAGCCCATGATCTTGCCCTTGCCTGTAAATTGGATTATG
ATGAAGATGCTAGTGCAATGCTGAAAGAAGTTCAACCTAGGGCACAGAAAATTGCAGAACATCGGAGAAAGTATGAGCGA
AAACGTGAAGAGCGAGAGATCAAAGAAAGAATAGAACGAGTTAAGAAGGCTCGAGAAGAGCATGAGAGAGCCCAGAGGGA
GGAAGAAGCCAGACGACAGTCAGGAGCTCAGTATGGCTCTTTTCCAGGTGGCTTTCCTGGGGGAATGCCTGGTAATTTTC
CCGGAGGAATGCCTGGAATGGGAGGGGGCATGCCTGGAATGGCTGGAATGCCTGGACTCAATGAAATTCTTAGTGATCCA
GAGGTTCTTGCAGCCATGCAGGATCCAGAAGTTATGGTGGCTTTCCAGGATGTGGCTCAGAACCCAGCAAATATGTCAAA
ATACCAGAGCAACCCAAAGGTTATGAATCTCATCAGTAAATTGTCAGCCAAATTTGGAGGTCAAGCGTAA

Library Parental gene expression (RPM)
bodymap2_adipose 322 .88 RPM
bodymap2_adrenal 198 .92 RPM
bodymap2_brain 280 .81 RPM
bodymap2_breast 341 .58 RPM
bodymap2_colon 497 .30 RPM
bodymap2_heart 152 .58 RPM
bodymap2_kidney 278 .86 RPM
bodymap2_liver 135 .78 RPM
bodymap2_lung 230 .08 RPM
bodymap2_lymph_node 242 .38 RPM
bodymap2_ovary 802 .26 RPM
bodymap2_prostate 455 .26 RPM
bodymap2_skeletal_muscle 303 .76 RPM
bodymap2_testis 342 .45 RPM
bodymap2_thyroid 441 .59 RPM
bodymap2_white_blood_cells 169 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005227 possible_ortholog 1 retrogene
retro_acar_2,
Ailuropoda melanoleuca ENSAMEG00000013880 possible_ortholog 1 retrogene
retro_amel_135,
Bos taurus ENSBTAG00000006202 possible_ortholog 4 retrogenes
retro_btau_254, retro_btau_427, retro_btau_621, retro_btau_658,
Canis familiaris ENSCAFG00000001139 possible_ortholog 14 retrogenes
retro_cfam_1029, retro_cfam_1101, retro_cfam_1122, retro_cfam_1239, retro_cfam_1467, retro_cfam_1830, retro_cfam_1950, retro_cfam_1958, retro_cfam_247, retro_cfam_262, retro_cfam_582, retro_cfam_808, retro_cfam_901, retro_cfam_969,
Choloepus hoffmanni ENSCHOG00000012676 ortholog_one2one 1 retrogene
retro_chof_2222,
Callithrix jacchus ENSCJAG00000004644 ortholog_one2many 11 retrogenes
retro_cjac_1843, retro_cjac_1953, retro_cjac_2177, retro_cjac_2275, retro_cjac_2789, retro_cjac_3123, retro_cjac_3570, retro_cjac_4019, retro_cjac_488, retro_cjac_640, retro_cjac_685,
Cavia porcellus ENSCPOG00000002290 ortholog_one2one 4 retrogenes
retro_cpor_1394, retro_cpor_1477, retro_cpor_166, retro_cpor_961,
Felis catus ENSFCAG00000011847 possible_ortholog 2 retrogenes
retro_fcat_920, retro_fcat_987,
Gorilla gorilla ENSGGOG00000026747 ortholog_one2one 16 retrogenes
retro_ggor_1600, retro_ggor_1734, retro_ggor_1791, retro_ggor_1975, retro_ggor_2177, retro_ggor_2634, retro_ggor_2692, retro_ggor_277, retro_ggor_3045, retro_ggor_629, retro_ggor_666, retro_ggor_749, retro_ggor_788, retro_ggor_832, retro_ggor_833, retro_ggor_938,
Microcebus murinus ENSMICG00000008875 ortholog_one2one 2 retrogenes
retro_mmur_481, retro_mmur_954,
Myotis lucifugus ENSMLUG00000007764 ortholog_one2one 2 retrogenes
retro_mluc_1088, retro_mluc_2021,
Macaca mulatta ENSMMUG00000019118 ortholog_one2one 3 retrogenes
retro_mmul_1842, retro_mmul_402, retro_mmul_438,
Monodelphis domestica ENSMODG00000013042 ortholog_one2many 2 retrogenes
retro_mdom_1087, retro_mdom_31,
Mus musculus ENSMUSG00000022403 ortholog_one2one 2 retrogenes
retro_mmus_2997, retro_mmus_651,
Nomascus leucogenys ENSNLEG00000015378 ortholog_one2one 17 retrogenes
retro_nleu_1142, retro_nleu_1155, retro_nleu_1606, retro_nleu_1852, retro_nleu_2075, retro_nleu_2088, retro_nleu_2376, retro_nleu_2404, retro_nleu_247, retro_nleu_2555, retro_nleu_2765, retro_nleu_3121, retro_nleu_3122, retro_nleu_319, retro_nleu_447, retro_nleu_552, retro_nleu_988,
Otolemur garnettii ENSOGAG00000016932 ortholog_one2many 1 retrogene
retro_ogar_224,
Pongo abelii ENSPPYG00000011858 ortholog_one2one 14 retrogenes
retro_pabe_1004, retro_pabe_2181, retro_pabe_2361, retro_pabe_2657, retro_pabe_2885, retro_pabe_3183, retro_pabe_3673, retro_pabe_3794, retro_pabe_437, retro_pabe_554, retro_pabe_727, retro_pabe_763, retro_pabe_798, retro_pabe_880,
Pteropus vampyrus ENSPVAG00000011908 ortholog_one2one 2 retrogenes
retro_pvam_1104, retro_pvam_393,
Rattus norvegicus ENSRNOG00000019070 ortholog_one2one 8 retrogenes
retro_rnor_1360, retro_rnor_1725, retro_rnor_1798, retro_rnor_1976, retro_rnor_2204, retro_rnor_2372, retro_rnor_2481, retro_rnor_2543,
Sarcophilus harrisii ENSSHAG00000000319 ortholog_one2many 2 retrogenes
retro_shar_70, retro_shar_767,
Sus scrofa ENSSSCG00000000071 ortholog_one2one 1 retrogene
retro_sscr_428,
Ictidomys tridecemlineatus ENSSTOG00000003165 ortholog_one2many 1 retrogene
retro_itri_88,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_178 73.87 58.81
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2. retro_hsap_201 78.15 63.41
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3. retro_hsap_500 92.23 52.03
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4. retro_hsap_619 92.42 71.27
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5. retro_hsap_756 96.21 100.00
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6. retro_hsap_812 88.49 98.64
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7. retro_hsap_986 78.30 56.64
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8. retro_hsap_1055 88.86 99.73
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9. retro_hsap_1203 95.39 100.00
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10. retro_hsap_2078 92.54 79.67
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11. retro_hsap_2189 89.34 65.85
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12. retro_hsap_2853 95.66 100.00
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13. retro_hsap_3206 82.56 69.11
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14. retro_hsap_3907 94.07 99.73
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15. retro_hsap_4009 92.93 99.73
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16. retro_hsap_4876 94.10 87.26
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Download FASTA sequences of all ENSG00000100380 retrocopies