Parental gene:

SYPL1, ENSG00000008282

Aliases:SYPL1, H-SP1, SYPL
Description:synaptophysin-like 1 [Source:HGNC Symbol;Acc:11507]
Organism:Human (Homo sapiens)
Coordinates:7:105730948..105753022(-)


>ENSG00000008282
ATGGCGCCCAACATCTACTTGGTTCGCCAGCGGATCAGTCGACTCGGCCAGAGGATGTCCGGCTTCCAGATCAACCTCAA
CCCGCTCAAGGAGCCACTCGGCTTCATCAAGGTCCTCGAGTGGATTGCTTCTATCTTTGCTTTTGCCACCTGTGGAGGTT
TTAAGGGCCAAACAGAAATTCAAGTGAATTGTCCTCCTGCAGTTACTGAGAATAAAACTGTTACAGCTACTTTTGGTTAT
CCATTCAGGTTGAATGAGGCATCATTTCAGCCACCTCCAGGTGTAAACATATGTGATGTAAATTGGAAAGATTACGTCCT
CATAGGCGATTACTCTTCTTCTGCACAATTCTATGTTACCTTTGCAGTCTTTGTGTTCCTGTACTGCATTGCTGCCCTTC
TGCTTTATGTTGGCTACACGAGTCTGTATCTGGATAGTCGTAAACTTCCTATGATAGACTTTGTTGTTACACTTGTTGCC
ACTTTTTTGTGGTTGGTGAGCACTTCAGCCTGGGCTAAAGCTCTGACAGATATTAAAATAGCTACTGGTCACAATATTAT
TGATGAACTTCCGCCTTGTAAGAAGAAAGCAGTACTGTGTTACTTTGGCTCTGTGACCAGTATGGGATCCCTAAATGTAT
CTGTGATATTTGGCTTTCTAAATATGATACTCTGGGGAGGAAATGCTTGGTTTGTGTACAAGGAGACCAGCCTACACAGT
CCATCAAATACATCTGCCCCTCATAGCCAAGGAGGTATTCCACCTCCTACCGGAATATAA

Library Parental gene expression (RPM)
bodymap2_adipose 138 .61 RPM
bodymap2_adrenal 169 .65 RPM
bodymap2_brain 90 .36 RPM
bodymap2_breast 133 .72 RPM
bodymap2_colon 209 .27 RPM
bodymap2_heart 109 .14 RPM
bodymap2_kidney 207 .45 RPM
bodymap2_liver 54 .37 RPM
bodymap2_lung 165 .44 RPM
bodymap2_lymph_node 139 .25 RPM
bodymap2_ovary 164 .95 RPM
bodymap2_prostate 247 .61 RPM
bodymap2_skeletal_muscle 237 .50 RPM
bodymap2_testis 187 .91 RPM
bodymap2_thyroid 176 .79 RPM
bodymap2_white_blood_cells 102 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016176 ortholog_one2many 2 retrogenes
retro_cjac_1588, retro_cjac_2483,
Cavia porcellus ENSCPOG00000009221 ortholog_one2one 1 retrogene
retro_cpor_239,
Equus caballus ENSECAG00000009695 ortholog_one2one 1 retrogene
retro_ecab_340,
Gorilla gorilla ENSGGOG00000006497 ortholog_one2one 1 retrogene
retro_ggor_1984,
Myotis lucifugus ENSMLUG00000014980 ortholog_one2one 3 retrogenes
retro_mluc_1884, retro_mluc_2083, retro_mluc_449,
Macaca mulatta ENSMMUG00000019593 ortholog_one2one 2 retrogenes
retro_mmul_1251, retro_mmul_1464,
Mus musculus ENSMUSG00000020570 ortholog_one2one 1 retrogene
retro_mmus_3470,
Nomascus leucogenys ENSNLEG00000008861 ortholog_one2one 1 retrogene
retro_nleu_2720,
Oryctolagus cuniculus ENSOCUG00000015127 ortholog_one2one 3 retrogenes
retro_ocun_1000, retro_ocun_1569, retro_ocun_331,
Otolemur garnettii ENSOGAG00000008079 ortholog_one2one 2 retrogenes
retro_ogar_1970, retro_ogar_2520,
Ochotona princeps ENSOPRG00000006755 ortholog_one2one 2 retrogenes
retro_opri_210, retro_opri_448,
Pongo abelii ENSPPYG00000018292 ortholog_one2one 1 retrogene
retro_pabe_2370,
Pan troglodytes ENSPTRG00000019570 ortholog_one2one 2 retrogenes
retro_ptro_1173, retro_ptro_1939,
Rattus norvegicus ENSRNOG00000009856 ortholog_one2one 2 retrogenes
retro_rnor_2273, retro_rnor_2992,
Sorex araneus ENSSARG00000013935 ortholog_one2one 1 retrogene
retro_sara_450,
Ictidomys tridecemlineatus ENSSTOG00000020871 ortholog_one2one 1 retrogene
retro_itri_1243,
Tupaia belangeri ENSTBEG00000009095 ortholog_one2one 2 retrogenes
retro_tbel_2025, retro_tbel_2566,
Tarsius syrichta ENSTSYG00000013296 ortholog_one2one 2 retrogenes
retro_tsyr_1768, retro_tsyr_775,
Tursiops truncatus ENSTTRG00000002848 ortholog_one2one 1 retrogene
retro_ttru_661,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1817 69.39 54.44
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Download FASTA sequences of all ENSG00000008282 retrocopies