Parental gene:

RPL27A, ENSFCAG00000008411

Aliases:None
Description:ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]
Organism:Cat (Felis catus)
Coordinates:D1:67557471..67560217(+)


>ENSFCAG00000008411
CAGCCATCCAGACTGAGAAAGACCCGGAAACTTCGGGGCCACGTGAGCCATGGCCACGGCCGCATTGGCAAGCACCGGAA
GCACCCAGGAGGCCGGGGTAATGCTGGCGGCATGCATCACCACAGGATCAACTTTGACAAATATCATCCAGGTTACTTTG
GAAAAGTTGGTATGAGGCATTACCACTTAAAAAGGAACCAGAGCTTCTGCCCAACTGTTAACCTTGATAAACTGTGGACT
TTGGTCAGTGAGCAGACACGGGTAAATGCTGCCAAAAACAAGACCGGAGCTGCTCCTATCATTGATGTGGTGCGATCGGG
CTACTACAAAGTATTGGGAAAGGGAAAGCTCCCCAAACAGCCTGTCATCGTGAAGGCCAAATTCTTCAGTAGAAGAGCTG
AGGAGAAGATTAAGGGTGTGGGGGGAGCCTGTGTCCTGGTAGCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 81 .03 RPM
SRP017611_kidney 276 .19 RPM
SRP017611_liver 198 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004205 ortholog_one2one 15 retrogenes
retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus ENSBTAG00000005349 possible_ortholog 2 retrogenes
retro_btau_126, retro_btau_45,
Canis familiaris ENSCAFG00000006936 possible_ortholog 2 retrogenes
retro_cfam_145, retro_cfam_384,
Callithrix jacchus ENSCJAG00000011775 ortholog_one2one 1 retrogene
retro_cjac_211,
Equus caballus ENSECAG00000022469 ortholog_one2one 1 retrogene
retro_ecab_289,
Ficedula albicollis ENSFALG00000000924 possible_ortholog 1 retrogene
retro_falb_20,
Loxodonta africana ENSLAFG00000000425 ortholog_one2one 2 retrogenes
retro_lafr_25, retro_lafr_50,
Myotis lucifugus ENSMLUG00000016616 possible_ortholog 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Monodelphis domestica ENSMODG00000007480 possible_ortholog 1 retrogene
retro_mdom_575,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Oryctolagus cuniculus ENSOCUG00000005442 ortholog_one2one 1 retrogene
retro_ocun_12,
Rattus norvegicus ENSRNOG00000014214 possible_ortholog 10 retrogenes
retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,
Sus scrofa ENSSSCG00000014569 ortholog_one2one 9 retrogenes
retro_sscr_527, retro_sscr_574, retro_sscr_587, retro_sscr_588, retro_sscr_644, retro_sscr_668, retro_sscr_677, retro_sscr_769, retro_sscr_809,
Taeniopygia guttata ENSTGUG00000008355 possible_ortholog 1 retrogene
retro_tgut_18,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_469 58.77 75.68
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2. retro_fcat_652 93.24 99.32
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3. retro_fcat_673 67.15 92.57
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4. retro_fcat_817 79.75 52.03
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5. retro_fcat_907 91.89 99.32
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6. retro_fcat_1162 79.45 97.97
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7. retro_fcat_1285 75.96 69.59
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8. retro_fcat_1305 86.23 92.57
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9. retro_fcat_1380 71.72 97.30
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10. retro_fcat_1635 92.91 85.81
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11. retro_fcat_1761 72.00 50.68
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12. retro_fcat_1805 68.37 64.86
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13. retro_fcat_1974 75.68 73.65
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Download FASTA sequences of all ENSFCAG00000008411 retrocopies