Parental gene:

RPS16, ENSDNOG00000001527

Aliases:None
Description:ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_952:14914..19789(-)


>ENSDNOG00000001527
ATGCCGTCCAAGGGCCCGTTGCAGTCGGTGCAGGTCTTCGGACGCAAGAAGACGGCTACAGCCGTGGCGCACTGTAAACG
GGGCAACGGCCTAATCAAGGTGAACGGGCGGCCTCTGGAGATGATCGAGCCGCGCACGCTGCAGTACAAGCTACTGGAAC
CTGTTCTGCTTCTGGGCAAAGAGCGGTTTGCTGGCGTGGACATCCGCGTCCGTGTGAAGGGTGGTGGTCATGTGGCCCAG
ATTTACGGTGAGTGCCAAGAACTGCATTGGAGTGGTAGGTGGTCCTGGGAGGGCCTTCACAAAGCTCATGTGCCCCATTT
TTGTGTATCTTCCTCACAGCAATCCGCCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGC
TTCCAAGAAAGAGATCAAAGACATCCTCATCCAGTACGACCGGACCCTGCTGGTGG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 597 .41 RPM
SRP012922_cerebellum 384 .64 RPM
SRP012922_heart 340 .39 RPM
SRP012922_kidney 842 .19 RPM
SRP012922_liver 509 .00 RPM
SRP012922_lung 1072 .13 RPM
SRP012922_quadricep_muscle 405 .71 RPM
SRP012922_spleen 1176 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014176 ortholog_one2one 1 retrogene
retro_acar_194,
Bos taurus ENSBTAG00000021093 possible_ortholog 3 retrogenes
retro_btau_1509, retro_btau_167, retro_btau_441,
Callithrix jacchus ENSCJAG00000014170 possible_ortholog 6 retrogenes
retro_cjac_2641, retro_cjac_2737, retro_cjac_3019, retro_cjac_885, retro_cjac_905, retro_cjac_949,
Cavia porcellus ENSCPOG00000011359 possible_ortholog 3 retrogenes
retro_cpor_1266, retro_cpor_1408, retro_cpor_1515,
Echinops telfairi ENSETEG00000015290 ortholog_one2one 4 retrogenes
retro_etel_1825, retro_etel_1834, retro_etel_193, retro_etel_351,
Felis catus ENSFCAG00000010743 possible_ortholog 4 retrogenes
retro_fcat_1258, retro_fcat_1709, retro_fcat_1806, retro_fcat_1976,
Gorilla gorilla ENSGGOG00000014414 ortholog_one2one 10 retrogenes
retro_ggor_110, retro_ggor_1250, retro_ggor_1344, retro_ggor_1664, retro_ggor_1766, retro_ggor_193, retro_ggor_2423, retro_ggor_2819, retro_ggor_652, retro_ggor_667,
Macropus eugenii ENSMEUG00000010380 ortholog_one2one 2 retrogenes
retro_meug_1306, retro_meug_612,
Microcebus murinus ENSMICG00000006110 ortholog_one2one 4 retrogenes
retro_mmur_1006, retro_mmur_1058, retro_mmur_375, retro_mmur_798,
Macaca mulatta ENSMMUG00000019370 possible_ortholog 8 retrogenes
retro_mmul_1018, retro_mmul_1080, retro_mmul_1175, retro_mmul_1219, retro_mmul_1403, retro_mmul_20, retro_mmul_767, retro_mmul_862,
Nomascus leucogenys ENSNLEG00000014388 possible_ortholog 3 retrogenes
retro_nleu_1266, retro_nleu_248, retro_nleu_46,
Otolemur garnettii ENSOGAG00000004497 possible_ortholog 4 retrogenes
retro_ogar_1229, retro_ogar_1309, retro_ogar_1313, retro_ogar_98,
Oreochromis niloticus ENSONIG00000000006 ortholog_one2one 1 retrogene
retro_onil_52,
Pelodiscus sinensis ENSPSIG00000016930 ortholog_one2one 1 retrogene
retro_psin_55,
Pan troglodytes ENSPTRG00000010970 ortholog_one2one 11 retrogenes
retro_ptro_1223, retro_ptro_1318, retro_ptro_1376, retro_ptro_1577, retro_ptro_1699, retro_ptro_2432, retro_ptro_2857, retro_ptro_2953, retro_ptro_2957, retro_ptro_548, retro_ptro_565,
Rattus norvegicus ENSRNOG00000019578 possible_ortholog 3 retrogenes
retro_rnor_10, retro_rnor_1823, retro_rnor_302,
Sorex araneus ENSSARG00000000852 ortholog_one2one 1 retrogene
retro_sara_595,
Sus scrofa ENSSSCG00000010712 possible_ortholog 1 retrogene
retro_sscr_731,
Sus scrofa ENSSSCG00000020817 possible_ortholog 3 retrogenes
retro_sscr_478, retro_sscr_5, retro_sscr_723,
Tarsius syrichta ENSTSYG00000005241 ortholog_one2one 4 retrogenes
retro_tsyr_1115, retro_tsyr_1208, retro_tsyr_1492, retro_tsyr_1780,
Tursiops truncatus ENSTTRG00000003571 ortholog_one2one 1 retrogene
retro_ttru_202,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_308 63.41 53.29
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2. retro_dnov_2260 77.27 57.89
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3. retro_dnov_2315 88.64 57.89
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Download FASTA sequences of all ENSDNOG00000001527 retrocopies