Parental gene:

CCDC90A, ENSCPOG00000014899

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_38:9485853..9496685(-)


>ENSCPOG00000014899
GAGCTAAGCCTGTCTGCACCATGCCTGCAGCTGGAGCACAGAAGGACAGGTTTCACCTCTCCGGGGCACCAGAAGCTCTA
CTTCGACACCCATGCCTTAGTGTGCTTACTGGAAGCAAATGGATTTACGACTCAACAAGCAGAAATCATTGCGTCTGCCT
TGGTCAAGATCATGGAGGCCAACGTGGACATTGTCTACAAAGACATGGTCACCAAGGTGCAGCAGGAGATCACTCTGCAG
CAGATAATGTCTAAGATTTCCAATGTGAAAAAGGATATGATTATTTTGGAGAAGAGTGAATTTTCAGCCCTCAGAGCAGA
AAATGAGAAAATAAAGCTTGAACTACATCAGTTAAAACAACAAGTCACGGATGAAGTGATCAAAGTCCGAACAGACACCA
AGTTAGACTTCAATCTAGAAAAGAGCAGAGTAAAAGAACTGTATTCACTGAACGAAAGGAAGCTGCTGGAATTGAGGACG
GAAATAGTAGAACTGCATGCCCAGCAGGATCGGGCCCTGACCCAGACCGACAGGAAGATTGAAACCGAGGTCGCTGGCCT
CAAGACCATGCTGGAGTCACACAAGCTTGACACGATCAAGTATCTAGCAGGGTCTGTATTTACCTGCCTGACCGTAGCTC
TGGGATTTTATCGCCTGTGGGTG

Library Parental gene expression (RPM)
SRP017611_brain 16 .45 RPM
SRP017611_kidney 61 .14 RPM
SRP017611_liver 4 .22 RPM
SRP040447_lung 11 .40 RPM
SRP040447_skeletal_muscle 11 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000395 ortholog_one2one 2 retrogenes
retro_amel_1628, retro_amel_473,
Canis familiaris ENSCAFG00000009857 ortholog_one2many 3 retrogenes
retro_cfam_1018, retro_cfam_1556, retro_cfam_823,
Callithrix jacchus ENSCJAG00000016050 ortholog_one2one 1 retrogene
retro_cjac_2522,
Equus caballus ENSECAG00000009150 ortholog_one2one 2 retrogenes
retro_ecab_273, retro_ecab_469,
Felis catus ENSFCAG00000005972 ortholog_one2one 3 retrogenes
retro_fcat_1290, retro_fcat_1405, retro_fcat_1538,
Homo sapiens ENSG00000050393 ortholog_one2one 1 retrogene
retro_hsap_1795,
Gorilla gorilla ENSGGOG00000002632 ortholog_one2one 1 retrogene
retro_ggor_1320,
Loxodonta africana ENSLAFG00000003287 ortholog_one2one 2 retrogenes
retro_lafr_1252, retro_lafr_870,
Microcebus murinus ENSMICG00000000183 ortholog_one2one 2 retrogenes
retro_mmur_280, retro_mmur_580,
Myotis lucifugus ENSMLUG00000010975 ortholog_one2one 1 retrogene
retro_mluc_1574,
Mustela putorius furo ENSMPUG00000000698 ortholog_one2one 1 retrogene
retro_mputfur_640,
Nomascus leucogenys ENSNLEG00000000914 ortholog_one2one 1 retrogene
retro_nleu_2768,
Otolemur garnettii ENSOGAG00000013458 ortholog_one2one 3 retrogenes
retro_ogar_1587, retro_ogar_1819, retro_ogar_3178,
Pan troglodytes ENSPTRG00000017740 ortholog_one2one 1 retrogene
retro_ptro_1200,
Tarsius syrichta ENSTSYG00000012562 ortholog_one2one 1 retrogene
retro_tsyr_810,
Tursiops truncatus ENSTTRG00000012874 ortholog_one2one 1 retrogene
retro_ttru_1597,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_934 70.34 65.16
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Download FASTA sequences of all ENSCPOG00000014899 retrocopies