Parental gene:

DDX3X, ENSCPOG00000013557

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_33:17170127..17182309(-)


>ENSCPOG00000013557
GAAAATGCGCTCGGGCTGGACCAGCAGTTTGCTGGCCTAGACCTGAACTCTTCAGATAATCAGACTGGAGGGAGTACAGC
CAGTAAGGGGCGTTACATTCCTCCACATTTAAGGAACAGAGAAGCTACTAAAGGGTACTACGACAAAGACAGTTCAGGGT
GGAGTTCTAGTAAGGATAAGGATGCATACAGCAGTTTTGGATCTCGTAATGATTCAAGAGGGAAGTCTAGTTTCTTCAGT
GATCGTGGGAGTGGATCAAGGGGAAGATTTGATGATCGCGGACGGGGTGACTATGATGGCATTGGCAGCCGTGGAGACAG
GGGTGGCTTTGGCAAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGACTGGTCAAAACCAC
TCCCACCAAGTGAACGCTTGGAGCAGGAACTCTTCTCTGGAGGCAACACTGGGATTAACTTTGAGAAATATGATGACATT
CCAGTTGAGGCAACAGGCAACAACTGTCCTCCACATATTGAAAGTTTCAGTGATGTCGAGATGGGAGAAATTATTATGGG
AAACATTGAGCTTACTCGTTATACTCGCCCAACTCCAGTGCAGAAGCATGCTATTCCTATTATCAAAGAGAAAAGAGACT
TGATGGCTTGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTGTTGCCCATCTTGAGTCAGATTTATTCAGATGGT
CCCGGTGAGGCTTTGAGGGCCATGAAGGAAAATGGAAGGTATGGGCGCCGCAAACAATACCCAATCTCCTTGGTGTTGGC
ACCAACCAGAGAGTTGGCAGTACAGATCTATGAAGAAGCCAGAAAATTCTCATACCGATCTAGAGTCCGTCCTTGTGTGG
TTTATGGTGGTGCTGATATTGGTCAGCAGATTCGAGACTTAGAACGTGGATGCCACTTGTTAGTAGCTACTCCAGGACGT
CTTGTGGATATGATGGAAAGAGGAAAGATTGGATTAGACTTCTGCAAGTACTTGGTGTTGGATGAGGCTGATCGGATGTT
GGATATGGGGTTTGAACCTCAGATACGTAGAATTGTGGAGCAAGATACTATGCCTCCAAAAGGTGTCCGTCACACTATGA
TGTTTAGTGCTACTTTTCCTAAGGAAATACAGATGCTGGCTCGTGATTTCTTAGATGAATATATCTTTCTGGCTGTGGGA
AGAGTTGGCTCTACTTCTGAGAACATCACACAGAAAGTAGTTTGGGTGGAAGAACTAGATAAACGGTCATTTCTTCTTGA
CCTCCTAAATGCAACAGGCAAGGATTCACTGACCTTAGTGTTTGTGGAGACCAAAAAGGGTGCAGATTCTCTGGAGGATT
TCTTATACCATGAAGGATATGCTTGTACCAGTATCCATGGAGACCGCTCTCAAAGAGATAGAGAAGAAGCCCTTCATCAG
TTCCGCTCAGGAAAAAGCCCAATTCTAGTGGCTACTGCAGTAGCAGCAAGAGGACTGGATATTTCAAATGTGAAACATGT
TATCAATTTTGACCTACCAAGTGATATTGAAGAGTATGTCCATCGCATTGGCCGTACAGGACGTGTAGGAAACCTTGGCC
TTGCCACTTCATTCTTCAATGAAAGGAACGTAAATATTACTAAGGATTTGTTGGATCTTCTTGTTGAAGCAAAGCAGGAA
GTGCCATCTTGGCTGGAAAACATGGCTTTTGAACACCACTACAAGGGTGGCAGTCGTGGCCGTTCTAAGAGCAGTAGATT
TAGTGGAGGGTTTGGTGCCAGAGACTACCGACAAAGTAGTGGTGCTGGCAGTTCCAGCTTCAGCAGCAGCCGCGCAAGCA
GCAGTCGCAGTGGTGGAGGTGGCCATGGCGGCAGCAGAGGATTTGGTGGAGGTGGCTATGGAGGCTTTTACAACAGCGAT
GGATATGGAGGAAATTACAACTCCCAGGGGGTTGACTGGTGGGGTAACTGA

Library Parental gene expression (RPM)
SRP017611_brain 121 .82 RPM
SRP017611_kidney 173 .36 RPM
SRP017611_liver 117 .00 RPM
SRP040447_lung 200 .38 RPM
SRP040447_skeletal_muscle 91 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000035907 ortholog_one2one 1 retrogene
retro_btau_1846,
Callithrix jacchus ENSCJAG00000009050 ortholog_one2many 2 retrogenes
retro_cjac_1428, retro_cjac_4062,
Equus caballus ENSECAG00000009901 ortholog_one2one 1 retrogene
retro_ecab_413,
Homo sapiens ENSG00000215301 ortholog_one2one 1 retrogene
retro_hsap_4709,
Macaca mulatta ENSMMUG00000017569 ortholog_one2one 2 retrogenes
retro_mmul_1898, retro_mmul_2504,
Mus musculus ENSMUSG00000000787 ortholog_one2many 1 retrogene
retro_mmus_205,
Ornithorhynchus anatinus ENSOANG00000011274 ortholog_one2many 1 retrogene
retro_oana_64,
Pongo abelii ENSPPYG00000020257 ortholog_one2one 1 retrogene
retro_pabe_3657,
Pan troglodytes ENSPTRG00000022488 possible_ortholog 1 retrogene
retro_ptro_3130,
Rattus norvegicus ENSRNOG00000023383 ortholog_one2many 1 retrogene
retro_rnor_1415,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_53 88.89 99.85
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2. retro_cpor_326 91.35 59.45
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Download FASTA sequences of all ENSCPOG00000013557 retrocopies