Parental gene:

PIGP, ENSCPOG00000007156

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_90:5572819..5579157(+)


>ENSCPOG00000007156
CGTGGTGAAGAGAGTCCGTCACTGACAACTATGTTCCCTTTCCACAGACTGTCCGAGGCCACGGGGAAAATGGTGGAAAA
CTCACCATCGCCATTGCCAGAAAGAGCGATTTATGGCTTTGTACTTTTCTTAAGCTCTCAGTTTGGCTTCATACTTTATC
TTGTGTGGGCTTTTATTCCTGAATCTTGGCTACACTCCTTAGGCTTAACCTATTGGCCTCAAAAATACTGGGCAGTGGCA
TTGCCTGTGTACCTCCTTATTACCATAGCAATGGGTTATGTGCTCTTATTTGGAATTAATATGATGAGCACCTCTCCACT
CGACTCCATTCATACAATCACAGATAACTATGCTGAAAATCAACAGCAGAAGAAATATCAAGAAGAGTCCATCCCAGCAT
TAAGGGACATTCCTATTAGTGAAGTAAATCAGATGTTTTTTCTTGCAAACAAAGAACTTTCCACCAAAAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 2 .93 RPM
SRP017611_kidney 10 .99 RPM
SRP017611_liver 10 .79 RPM
SRP040447_lung 4 .09 RPM
SRP040447_skeletal_muscle 2 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000009702 ortholog_one2many 4 retrogenes
retro_cfam_1022, retro_cfam_1559, retro_cfam_1976, retro_cfam_238,
Callithrix jacchus ENSCJAG00000002683 ortholog_one2one 2 retrogenes
retro_cjac_1276, retro_cjac_2587,
Equus caballus ENSECAG00000019349 ortholog_one2one 1 retrogene
retro_ecab_348,
Felis catus ENSFCAG00000028400 ortholog_one2one 8 retrogenes
retro_fcat_1269, retro_fcat_1286, retro_fcat_1408, retro_fcat_1495, retro_fcat_1671, retro_fcat_181, retro_fcat_1859, retro_fcat_729,
Homo sapiens ENSG00000185808 ortholog_one2one 4 retrogenes
retro_hsap_163, retro_hsap_1909, retro_hsap_2110, retro_hsap_2423,
Gorilla gorilla ENSGGOG00000010275 ortholog_one2one 3 retrogenes
retro_ggor_1397, retro_ggor_1508, retro_ggor_1639,
Macaca mulatta ENSMMUG00000016211 ortholog_one2one 2 retrogenes
retro_mmul_377, retro_mmul_624,
Monodelphis domestica ENSMODG00000020988 ortholog_one2one 1 retrogene
retro_mdom_1807,
Mustela putorius furo ENSMPUG00000008312 ortholog_one2one 5 retrogenes
retro_mputfur_1069, retro_mputfur_1388, retro_mputfur_421, retro_mputfur_642, retro_mputfur_826,
Mus musculus ENSMUSG00000022940 ortholog_one2one 1 retrogene
retro_mmus_2841,
Nomascus leucogenys ENSNLEG00000004523 ortholog_one2one 4 retrogenes
retro_nleu_1235, retro_nleu_1276, retro_nleu_1558, retro_nleu_2444,
Oryctolagus cuniculus ENSOCUG00000022451 ortholog_one2one 3 retrogenes
retro_ocun_586, retro_ocun_664, retro_ocun_881,
Otolemur garnettii ENSOGAG00000011097 ortholog_one2one 1 retrogene
retro_ogar_2382,
Pongo abelii ENSPPYG00000011409 ortholog_one2one 3 retrogenes
retro_pabe_1787, retro_pabe_1993, retro_pabe_464,
Pan troglodytes ENSPTRG00000013897 ortholog_one2one 3 retrogenes
retro_ptro_1397, retro_ptro_1547, retro_ptro_156,
Pteropus vampyrus ENSPVAG00000000857 ortholog_one2one 3 retrogenes
retro_pvam_1100, retro_pvam_1182, retro_pvam_682,
Sarcophilus harrisii ENSSHAG00000014284 ortholog_one2one 1 retrogene
retro_shar_548,
Sus scrofa ENSSSCG00000012061 ortholog_one2one 1 retrogene
retro_sscr_1085,
Ictidomys tridecemlineatus ENSSTOG00000010943 ortholog_one2one 5 retrogenes
retro_itri_1237, retro_itri_1258, retro_itri_1869, retro_itri_616, retro_itri_897,
Tarsius syrichta ENSTSYG00000009899 ortholog_one2one 1 retrogene
retro_tsyr_47,
Tursiops truncatus ENSTTRG00000007711 ortholog_one2one 3 retrogenes
retro_ttru_1043, retro_ttru_677, retro_ttru_883,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_426 62.37 58.60
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2. retro_cpor_680 81.16 87.90
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Download FASTA sequences of all ENSCPOG00000007156 retrocopies