Parental gene:

ENSCPOG00000006626

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_81:4016114..4027993(+)


>ENSCPOG00000006626
CAGGTTGACTTGACCAAAGCAATGGTGATGGAGAAGCCGAGTCCCCTGCTGGTCGGGCGGGAGTTTGTGAGACAGTATTA
CACGCTGCTGAACCAGGCCCCGGACATGCTGCACCGATTTTATGGAAAGAACTCTTCCTATGTCCACGGAGGATTGGATT
CCAATGGGAAACCTGCAGATGCAGTCTATGGACAGAAAGAAATCCACAGGAAAGTGATGTCACAGAACTTCACCAACTGC
CACACCAAGATCCGTCATGTGGACGCACATGCTACACTCAACGACGGCGTGGTGGTCCAGGTCATGGGGCTGCTCTCCAA
CAACAACCAGGCGTTGCGGAGGTTCATGCAAACGTTTGTCCTTGCTCCCGAGGGCTCTGTTGCAAATAAATTCTATGTTC
ACAATGATATCTTCAGATACCAGGATGAGGTCTTTGGCGGCTTTGTCACTGAGCCTCAGGAGGAATCTGAGGAAGAAGTA
GAGGAACCTGAAGAAAGACGGCAGACACCTGAAGCTGTACCTGATGATTCTGGAACTTTTTATGATCAACCTGTGAGAAG
CAATGACGTGGAAGAACATTTAGAGGAACCTGTTGCTGAACCAGAGCCTGATCCTGAACCAGAACCAGAGCAAGAACCTG
CATCTGAGGTCCAGGAGGAGAAGGCCGAGCCTGTTTTGGAAGAAGCTGCTCCCGAGGATGCTCAGAAGAGCTCTTCTCCT
GCGCCTGCCGACCCAGCCCAGACGGCGCAGGAAGACTTGAGGACGTTTTCGTGGGCGTCTGTGACCAGTAAGAACCTCCC
ACCCAGCGGTGCTGTCCCCGTTACAGGGATACCGCCCCACGTGGTGAAAGCGCCGGCGTCGCAGCCCCGTCCAGAGTCTA
AACCTGAATCTCAGCTTCCACCGCAGAGGCCTCAGAGGGATCAAAGAGTGCGAGAGCAGCGAATAAATATTCCTCCCCAG
AGGGGGCCTAGACCAATTCGTGAGGCTGGGGAGCAAGGTGATGCTGAACCCCGGAGAATCGTGAGACACCCTGACAGCCA
CCAGCTCTTCATCGGTAACCTGCCTCATGAGGTGGACAAATCGGAACTTAAAGATTTCTTTCAAAGTTACGGCAACGTGG
TGGACCTGCGCATCAACAGTGGCGGGAAGTTACCCAATTTTGGCTTTGTTGTGTTCGATGATTCTGAGCCTGTGCAGAAG
GTCCTTAGCAACAGGCCTATCATGTTCAGAGGTGAAGTCCGTCTGAATGTGGAAGAGAAGAAGACCCGTGCTGCCAGGGA
AGGGGACCGACGGGACAACCGCCTGCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGCGGTGGCCTGAGAGGCCCTCCGC
GCGGAGGAATGGTGCAGAAGCCCGGCTTCGGAGTGGGAAGGGGCCTTGCTCCCAGGCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 18 .92 RPM
SRP017611_kidney 38 .11 RPM
SRP017611_liver 29 .03 RPM
SRP040447_lung 37 .18 RPM
SRP040447_skeletal_muscle 60 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000018758 possible_ortholog 3 retrogenes
retro_dnov_1492, retro_dnov_1632, retro_dnov_526,
Echinops telfairi ENSETEG00000017447 possible_ortholog 1 retrogene
retro_etel_1488,
Homo sapiens ENSG00000145907 possible_ortholog 1 retrogene
retro_hsap_2322,
Microcebus murinus ENSMICG00000012235 possible_ortholog 2 retrogenes
retro_mmur_1247, retro_mmur_1469,
Mustela putorius furo ENSMPUG00000013661 possible_ortholog 1 retrogene
retro_mputfur_625,
Mus musculus ENSMUSG00000018583 ortholog_one2many 3 retrogenes
retro_mmus_1389, retro_mmus_3229, retro_mmus_3688,
Nomascus leucogenys ENSNLEG00000016470 ortholog_one2many 1 retrogene
retro_nleu_1814,
Oryctolagus cuniculus ENSOCUG00000022143 ortholog_one2many 1 retrogene
retro_ocun_1352,
Otolemur garnettii ENSOGAG00000001726 possible_ortholog 2 retrogenes
retro_ogar_3156, retro_ogar_3183,
Pongo abelii ENSPPYG00000015968 possible_ortholog 1 retrogene
retro_pabe_2104,
Pan troglodytes ENSPTRG00000017438 possible_ortholog 1 retrogene
retro_ptro_1696,
Pteropus vampyrus ENSPVAG00000017250 possible_ortholog 2 retrogenes
retro_pvam_1188, retro_pvam_188,
Rattus norvegicus ENSRNOG00000013186 ortholog_many2many 1 retrogene
retro_rnor_1282,
Tupaia belangeri ENSTBEG00000004386 possible_ortholog 12 retrogenes
retro_tbel_2177, retro_tbel_2295, retro_tbel_2296, retro_tbel_2327, retro_tbel_2352, retro_tbel_2460, retro_tbel_2461, retro_tbel_3889, retro_tbel_3928, retro_tbel_4180, retro_tbel_4190, retro_tbel_4246,
Tarsius syrichta ENSTSYG00000004570 possible_ortholog 1 retrogene
retro_tsyr_1391,
Tursiops truncatus ENSTTRG00000009072 possible_ortholog 1 retrogene
retro_ttru_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_464 71.37 50.32
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2. retro_cpor_1119 72.13 60.04
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Download FASTA sequences of all ENSCPOG00000006626 retrocopies