RetrogeneDB ID: retro_mputfur_625

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896927.1:1208491..1209217(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: G3BP1
• Ensembl ID: ENSMPUG00000013661
• Aliases: None
• Description: GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292]

Sequence

>retro_mputfur_625
ATAGTTATAGAGAAACCTAGTCCCCTGTGGGTGGGGCAGGAACTTGTGAGGAAGTATTATACATCGCTAAACCAGGCCCC
AGACATGCCTCGCAGATTTTATGGAAAGAACTCTTCTTATGTCCGTGGGGGGTTGGATTCAAATGGAAAGTCAGCAGATG
CAGTTTATGGACAGAAAGAAATTCATAAGAAAATGATGTCACAAAACTTTCCCAATTGTCACACTAAGAGGTGTAATCCT
CATGCCATCTCAGAATGATGGTGTCCAGGTAATGGGGTTGCTCTCTAATAACAACCAGCTTTTTAGGAGATTCATGAAGA
CATTTGCCCTTGGTCCTAAGGGCTCTGTTGCAAATAAGTTCTACATTCATATCTCCAGATACCAAGATGAGGTCTTTGAT
GGCTTTGTCACTGAGCCTCAGGAGAAATCTGAGGAAGAGGGAGAGAAACCTGAAGAAAGACAGAAGACACCTGAGGTCGT
ACTTGATGATTCTGGAACTTTCTATGATCAGACTGTCAGCAATGACTTGGAAGAACATTTAGAGGAACCTGTTGCTGAGC
CAGAACCAGAGCAAGAACCTATCTTTGAAATCCAACAGGAAAATCTGAGCCAGTATTAGAAGAAACTACTCCTGAGGATA
CGCAGAAGAGTTCTTCCCCAACACCTATGAACATAGATCAGACCATACAGGAAAACTTAAGGACATTTTCTTGGGAATTG
GTGACC

Alignment

ORF - retro_mputfur_625 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.58 %
• Parental protein coverage: 54.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF
          .V.EKPSPL.VG.E.VR.YYT.LNQAPDM..RFYGKNSSYV.GGLDSNGK.ADAVYGQKEIH.K.MSQNF
Retrocopy IVIEKPSPLWVGQELVRKYYTSLNQAPDMPRRFYGKNSSYVRGGLDSNGKSADAVYGQKEIHKKMMSQNF

Parental  TNCHTKIRHVDAHA-TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFG
          .NCHTK......HA...NDGV..QVMGLLSNNNQ..RRFM.TF.L.P.GSVANKFY.H..I.RYQDEVF.
Retrocopy PNCHTK--RCNPHA>SQNDGV--QVMGLLSNNNQLFRRFMKTFALGPKGSVANKFYIH--ISRYQDEVFD

Parental  GFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEQEQEPVSEI
          GFVTEPQ...................V.DDSGTFYDQTVSND....LEE...EP...PEPEQE..P..EI
Retrocopy GFVTEPQXXXXXXXXXXXXXXXXXXXVLDDSGTFYDQTVSND----LEEHLEEPVAEPEPEQE--PIFEI

Parental  QEE-KSEPALEETAPEDVQKSSSPAPTDITQTVQEDLRTFSWASVT
          Q.E.KSEP.LEET.PED.QKSSSP.P..I.QT.QE.LRTFSW..VT
Retrocopy QQE<KSEPVLEETTPEDTQKSSSPTPMNIDQTIQENLRTFSWELVT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_625 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_625 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000006626	2 retrocopies	retro_cpor_1119, retro_cpor_464,
Dasypus novemcinctus	ENSDNOG00000018758	3 retrocopies	retro_dnov_1492, retro_dnov_1632, retro_dnov_526,
Homo sapiens	ENSG00000145907	1 retrocopy	retro_hsap_2322,
Microcebus murinus	ENSMICG00000012235	2 retrocopies	retro_mmur_1247, retro_mmur_1469,
Mustela putorius furo	ENSMPUG00000013661	1 retrocopy	retro_mputfur_625 ,
Oryctolagus cuniculus	ENSOCUG00000022143	1 retrocopy	retro_ocun_1352,
Otolemur garnettii	ENSOGAG00000001726	2 retrocopies	retro_ogar_3156, retro_ogar_3183,
Pongo abelii	ENSPPYG00000015968	1 retrocopy	retro_pabe_2104,
Pan troglodytes	ENSPTRG00000017438	1 retrocopy	retro_ptro_1696,
Pteropus vampyrus	ENSPVAG00000017250	2 retrocopies	retro_pvam_1188, retro_pvam_188,
Rattus norvegicus	ENSRNOG00000013186	1 retrocopy	retro_rnor_1282,
Tarsius syrichta	ENSTSYG00000004570	1 retrocopy	retro_tsyr_1391,