Parental gene:

G3BP1, ENSDNOG00000018758

Aliases:None
Description:GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3984:15337..64530(+)


>ENSDNOG00000018758
TTTTATGGAAAAAACTCTTCTTATGTCCATGGGGGATTGGATTCAAATGGAAAACCAGCAGATGCGGTCTATGGACAGAA
AGAAATCCATAGGAAAGTGATGTCACAGAACTTTACCAACTGCCATACTAAGATTCGCCATGTTGATGCTCATGCCACTC
TAAATGATGGTGTGGTGGTACAGGTGATGGGACTGCTGTCTAATAACAACCAGGCTTTGAGGAGATTCATGCAGACTTTT
GTCCTTGCTCCTGAGGGCTCTGTGGCAAATAAATTCTATGTTCACAATGATATCTTCAGATACCAAGATGAGGTCTTTGG
TGGCTTTGTCACTGAGCCTCAAGAGGAGTCTGAGGAAGAAGTAGAGGAACCTGAGGAAAGACAGCAAACACCAGAGGTGG
TACCCGAGGATTCTGGAACTTTCTATGATCAGACTGTCAGCAATGACTTGGAAGAACATTTAGAGGAACCTGTTGCTGAG
CCAGAGCCCGATCCTGAACCAGAACCGGAGCAAGAACCTGTATCTGAAATCCAAGAGGAAAAATCTGAACCAGTATTGGA
AGAAGCTCCTCCTGAGGATCCTCAAAAAAATTCTTCCCCAGCACCTGCAGACATAGCTCAGACTGTACAGGAAGACTTGA
GGACATTTTCTTGGGCATCTGTGACCAGTAAGAACCTTCCACCCAGTGGAGCTGTTCCTGTTACCGGGATACCACCTCAT
GTTGTTAAAATACCGGCTTCACAGCCCCGTCTAGAGTCTAAGCCTGAATCTCAGATTCCACCACAGAGGCCTCAGAGGGA
TCAAAGAGTGCGAGAACAACGAATAAATATTCCTCCACAGAGAGGACCTAGACCAATCCGTGAGGCTGGTGAGCAAGGGG
ATGTTGAACCCCGAAGAATCGTGAGACACCGTGACAGTCACCAGCTCTTCATTGGCAACCTGCCTCATGAGGTGGACAAA
TCAGAACTTAAAGATTTCTTTCAAAATTATGGGAATGTGGTGGAGCTGCGCATTAACAGTGGTGGGAAATTACCTAATTT
TGGTTTTGTTGTGTTTGATGACTCTGAACCTGTTCAGAAGGTCCTTAGCAACAGGCCCATCATGTTCAGAGGTGAGGTTC
GTCTGAATGTGGAAGAGAAGAAGACACGAGCAGCCAGGGAAGGCGACCGTAGAGATAACCGCCTGGGACCCGGAGGCCCT
CGAGGTGGGCTGGGTGGTGGAATGAGAGGCCCTCCTCGTGGAGGCATGGTGCAGAAACCAGGATTTGGAGTGGGAAGAGG
GATTGCTCCAAGGCAGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 61 .26 RPM
SRP012922_cerebellum 16 .22 RPM
SRP012922_heart 18 .10 RPM
SRP012922_kidney 23 .00 RPM
SRP012922_liver 16 .41 RPM
SRP012922_lung 36 .35 RPM
SRP012922_quadricep_muscle 29 .42 RPM
SRP012922_spleen 52 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006626 possible_ortholog 2 retrogenes
retro_cpor_1119, retro_cpor_464,
Echinops telfairi ENSETEG00000017447 ortholog_one2one 1 retrogene
retro_etel_1488,
Homo sapiens ENSG00000145907 ortholog_one2one 1 retrogene
retro_hsap_2322,
Microcebus murinus ENSMICG00000012235 ortholog_one2one 2 retrogenes
retro_mmur_1247, retro_mmur_1469,
Mustela putorius furo ENSMPUG00000013661 ortholog_one2one 1 retrogene
retro_mputfur_625,
Oryctolagus cuniculus ENSOCUG00000022143 possible_ortholog 1 retrogene
retro_ocun_1352,
Otolemur garnettii ENSOGAG00000001726 ortholog_one2one 2 retrogenes
retro_ogar_3156, retro_ogar_3183,
Pongo abelii ENSPPYG00000015968 ortholog_one2one 1 retrogene
retro_pabe_2104,
Pan troglodytes ENSPTRG00000017438 ortholog_one2one 1 retrogene
retro_ptro_1696,
Pteropus vampyrus ENSPVAG00000017250 ortholog_one2one 2 retrogenes
retro_pvam_1188, retro_pvam_188,
Rattus norvegicus ENSRNOG00000013186 possible_ortholog 1 retrogene
retro_rnor_1282,
Tupaia belangeri ENSTBEG00000004386 ortholog_one2one 12 retrogenes
retro_tbel_2177, retro_tbel_2295, retro_tbel_2296, retro_tbel_2327, retro_tbel_2352, retro_tbel_2460, retro_tbel_2461, retro_tbel_3889, retro_tbel_3928, retro_tbel_4180, retro_tbel_4190, retro_tbel_4246,
Tarsius syrichta ENSTSYG00000004570 ortholog_one2one 1 retrogene
retro_tsyr_1391,
Tursiops truncatus ENSTTRG00000009072 ortholog_one2one 1 retrogene
retro_ttru_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_526 73.71 53.01
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2. retro_dnov_1492 96.04 63.43
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3. retro_dnov_1632 73.58 100.00
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Download FASTA sequences of all ENSDNOG00000018758 retrocopies