Parental gene:

ENSCPOG00000004634

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:6459358..6470254(-)


>ENSCPOG00000004634
ATGGGCATCTTTTGCCATGGGCTGCAAGGTTTGGCTGGGAAGTTGCAGGCTCCTGGCAGGGAGTCCCTGCGGTTCTTAAC
TCGCCCTTGCGGGGACACTTTACAGGCCAGCGTCGCCAAGAAGGCCCGGGCCGGAGAGGATGAGCCCGGCACGCCGCCCT
CCTCGCCGCTGAGCCCAGAGCAACTGGACCGCATCCAGAAAAACAAGGCCGCGGCGCTGCTCAGACTCGCGGCCCGCAAC
GTGCCGGTGGGCTTTGGGGACAGCTGGAAGAAGCACCTCAGCGGAGAGTTCGGGAAACCGTATTTTATAAAGCTAATGGG
ATTTGTTGCAGAAGAAAGAAAACGTTACACTGTTTATCCACCCCCACACCAAGTATTCACCTGGACCCAGATGTGTGACA
TACAAGATGTGAAGGTTGTCATCCTGGGACAGGATCCTTATCATGGACCCAGTCAAGCTCATGGACTCTGCTTCAGCGTC
CAAAGACCTGTTCCACCCCCGCCCAGTTTGGAAAACATCTACAAAGAGCTGTCGACAGACATAGATGGTTTTCTTCATCC
TGGCCATGGAGATTTATCTGGGTGGGCCAAACAAGGTGTCCTCCTGCTCAATGCCGTCCTCACTGTCCGGGCCCATCAAG
CCAATTCACATAAGGAGCAAGGCTGGGAGCAGTTCACCGATGCTGTTGTGGCCTGGCTCAATCAGAACTTGAATGGCCTT
GTCTTCTTGCTCTGGGGCTCTTACGCTCAGAAGAAGGGAAGTGTCATTGATAGGAAGCGGCACCATGTCCTGCAGACTGC
TCACCCCTCCCCATTGTCGGTGTATAGAGGATTCTTTGGCTGTCAACATTTTTCTAAAGCCAATGAGCTGCTGCGGAAGT
CTGGCAAGAAGCCCATTGACTGGAGTGAGCTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 4 .20 RPM
SRP017611_kidney 3 .56 RPM
SRP017611_liver 5 .75 RPM
SRP040447_lung 5 .62 RPM
SRP040447_skeletal_muscle 6 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016525 ortholog_one2many 1 retrogene
retro_amel_153,
Canis familiaris ENSCAFG00000011144 ortholog_one2many 1 retrogene
retro_cfam_1567,
Callithrix jacchus ENSCJAG00000010134 ortholog_many2many 2 retrogenes
retro_cjac_1467, retro_cjac_520,
Dasypus novemcinctus ENSDNOG00000005335 ortholog_one2many 2 retrogenes
retro_dnov_1001, retro_dnov_627,
Equus caballus ENSECAG00000008080 ortholog_one2many 1 retrogene
retro_ecab_747,
Felis catus ENSFCAG00000008349 ortholog_one2many 1 retrogene
retro_fcat_445,
Macropus eugenii ENSMEUG00000015792 ortholog_one2many 3 retrogenes
retro_meug_1594, retro_meug_1877, retro_meug_2077,
Myotis lucifugus ENSMLUG00000010755 ortholog_one2many 3 retrogenes
retro_mluc_1305, retro_mluc_2060, retro_mluc_989,
Macaca mulatta ENSMMUG00000006957 ortholog_one2many 2 retrogenes
retro_mmul_1564, retro_mmul_2115,
Mustela putorius furo ENSMPUG00000003463 ortholog_one2many 1 retrogene
retro_mputfur_1592,
Nomascus leucogenys ENSNLEG00000001442 ortholog_one2many 3 retrogenes
retro_nleu_1325, retro_nleu_1950, retro_nleu_2802,
Oryctolagus cuniculus ENSOCUG00000003145 ortholog_one2many 1 retrogene
retro_ocun_1767,
Otolemur garnettii ENSOGAG00000007441 ortholog_one2many 2 retrogenes
retro_ogar_1593, retro_ogar_2716,
Pongo abelii ENSPPYG00000004929 ortholog_one2many 3 retrogenes
retro_pabe_1354, retro_pabe_1355, retro_pabe_2792,
Pan troglodytes ENSPTRG00000005419 ortholog_one2many 1 retrogene
retro_ptro_1108,
Sus scrofa ENSSSCG00000009938 ortholog_one2many 1 retrogene
retro_sscr_1202,
Ictidomys tridecemlineatus ENSSTOG00000006894 ortholog_one2many 1 retrogene
retro_itri_661,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_6 77.85 95.07
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2. retro_cpor_863 77.12 87.17
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3. retro_cpor_1339 50.48 65.46
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Download FASTA sequences of all ENSCPOG00000004634 retrocopies