Parental gene:

ENSCPOG00000002962

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:19190659..19197939(+)


>ENSCPOG00000002962
ATGGCGGCCGCTAAGGATACTCATGAGGACCATGATACCTCCACTGAGAATGCAGACGAGTCCAACCATGATCCCCAGTT
TGAACCAATTGTTTCTCTTCCCGAGCAAGAAATTAAAACACTGGAGGAAGATGAGGAAGAACTTTTTAAAATGCGAGCAA
AGTTGTTCCGATTTGCTTCAGAGAATGATAGCCCAGAGTGGAAGGAACGTGGCACTGGTGACGTCAAACTCCTAAAGCAT
AAGGATAAGGGGACCATTCGCCTCCTCATGAGGAGGGACAAGACCCTGAAGATCTGCGCCAACCACTATATCACGCCCAT
GATGGAGCTTAAGCCAAATGCTGGTAGTGACCGTGCCTGGGTCTGGAATACCCATGCTGACTTTGCCGATGAGTACCCCA
AGCCGGAGCTGCTTGCCATCCGCTTCCTAAATGCTGAAAATGCACAAAAATTTAAAACAAAGTTTGAAGAATGCAGGAAA
GAGATTGAAGAGAGACCTCCAGCAGGACTGGGCAAAAATGATAATGCGGAAAAAGTAGCTGAAAAGCTAGAAGCTCTGTC
TGTAAAGGAGAATAAGGACCCTGGAAAAGAGACCGAAGAGAAATCAGAGAAGCAATGA

Library Parental gene expression (RPM)
SRP017611_brain 16 .97 RPM
SRP017611_kidney 18 .01 RPM
SRP017611_liver 9 .31 RPM
SRP040447_lung 23 .88 RPM
SRP040447_skeletal_muscle 10 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010749 ortholog_many2many 1 retrogene
retro_cjac_2619,
Dipodomys ordii ENSDORG00000011317 ortholog_one2many 2 retrogenes
retro_dord_241, retro_dord_602,
Echinops telfairi ENSETEG00000015996 ortholog_one2many 2 retrogenes
retro_etel_1018, retro_etel_1518,
Homo sapiens ENSG00000099901 ortholog_one2many 2 retrogenes
retro_hsap_1727, retro_hsap_4797,
Gorilla gorilla ENSGGOG00000000784 possible_ortholog 1 retrogene
retro_ggor_170,
Macropus eugenii ENSMEUG00000016620 ortholog_one2many 8 retrogenes
retro_meug_1064, retro_meug_1553, retro_meug_1670, retro_meug_1795, retro_meug_272, retro_meug_422, retro_meug_657, retro_meug_753,
Myotis lucifugus ENSMLUG00000017535 ortholog_one2many 1 retrogene
retro_mluc_1429,
Macaca mulatta ENSMMUG00000020100 ortholog_one2many 1 retrogene
retro_mmul_1215,
Monodelphis domestica ENSMODG00000010312 ortholog_many2many 5 retrogenes
retro_mdom_1290, retro_mdom_1397, retro_mdom_1406, retro_mdom_1996, retro_mdom_288,
Mus musculus ENSMUSG00000005732 ortholog_one2many 1 retrogene
retro_mmus_3632,
Nomascus leucogenys ENSNLEG00000005684 ortholog_one2many 2 retrogenes
retro_nleu_2991, retro_nleu_934,
Otolemur garnettii ENSOGAG00000034333 ortholog_one2many 2 retrogenes
retro_ogar_1428, retro_ogar_2735,
Pongo abelii ENSPPYG00000011593 ortholog_one2many 4 retrogenes
retro_pabe_1438, retro_pabe_1470, retro_pabe_3731, retro_pabe_943,
Rattus norvegicus ENSRNOG00000001884 ortholog_one2many 4 retrogenes
retro_rnor_1817, retro_rnor_811, retro_rnor_884, retro_rnor_907,
Sarcophilus harrisii ENSSHAG00000006873 ortholog_many2many 1 retrogene
retro_shar_9,
Ictidomys tridecemlineatus ENSSTOG00000026840 ortholog_many2many 2 retrogenes
retro_itri_1579, retro_itri_345,
Tarsius syrichta ENSTSYG00000013573 possible_ortholog 1 retrogene
retro_tsyr_320,
Tursiops truncatus ENSTTRG00000008142 possible_ortholog 2 retrogenes
retro_ttru_456, retro_ttru_890,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1249 95.15 100.00
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Download FASTA sequences of all ENSCPOG00000002962 retrocopies