Parental gene:

RHOC, ENSCJAG00000013657

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:148699412..148706793(-)


>ENSCJAG00000013657
ATGGCTGCAATCCGAAAGAAGCTGGTGATCGTTGGGGATGGTGCCTGTGGGAAGACCTGCCTCCTCATCGTCTTCAGCAA
GGATCAGTTTCCAGAGGTCTACGTCCCTACTGTCTTTGAGAACTATATTGCGGACATTGAAGTGGACGGCAAACAGGTGG
AGCTGGCCCTGTGGGACACAGCAGGACAGGAAGACTACGATCGACTGCGGCCTCTCTCCTACCCCGACACTGACGTCATC
CTCATGTGCTTCTCCATCGACAGCCCCGACAGCCTGGAAAACATTCCTGAGAAGTGGACCCCAGAGGTGAAGCACTTCTG
CCCCAATGTGCCCATCATCCTAGTGGGGAATAAGAAGGACCTGAGGCAAGATGAGCACACCAGGAGAGAGCTGGCCAAGA
TGAAGCAGGAGCCTGTTCGGTCTGAGGAAGGCCGAGACATGGCAAACCGGATCAGTGCCTTTGGCTACCTTGAGTGCTCA
GCCAAGACCAAGGAGGGAGTGCGGGAGGTGTTTGAGATGGCCACTCGGGCTGGCCTCCAGGTCCGCAAGAACAAGCGCCG
GAGGGGCTGTCCCATTCTCTGA

Library Parental gene expression (RPM)
SRP051959_colon 17 .62 RPM
SRP051959_heart 16 .72 RPM
SRP051959_kidney 21 .08 RPM
SRP051959_liver 20 .51 RPM
SRP051959_lung 17 .57 RPM
SRP051959_lymph_node 6 .16 RPM
SRP051959_skeletal_muscle 15 .26 RPM
SRP051959_spleen 12 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014299 ortholog_one2one 1 retrogene
retro_btau_1171,
Canis familiaris ENSCAFG00000013413 ortholog_one2one 1 retrogene
retro_cfam_1152,
Callithrix jacchus ENSCJAG00000003904 within_species_paralog 3 retrogenes
retro_cjac_1306, retro_cjac_2010, retro_cjac_411,
Callithrix jacchus ENSCJAG00000013018 other_paralog 1 retrogene
retro_cjac_3930,
Equus caballus ENSECAG00000010174 ortholog_one2one 3 retrogenes
retro_ecab_112, retro_ecab_257, retro_ecab_932,
Ficedula albicollis ENSFALG00000000736 ortholog_one2one 1 retrogene
retro_falb_11,
Gorilla gorilla ENSGGOG00000002741 ortholog_one2one 2 retrogenes
retro_ggor_18, retro_ggor_732,
Macropus eugenii ENSMEUG00000004807 possible_ortholog 1 retrogene
retro_meug_37,
Monodelphis domestica ENSMODG00000000981 ortholog_one2one 1 retrogene
retro_mdom_1245,
Otolemur garnettii ENSOGAG00000027678 ortholog_one2one 3 retrogenes
retro_ogar_2606, retro_ogar_3360, retro_ogar_58,
Sarcophilus harrisii ENSSHAG00000001981 ortholog_one2one 1 retrogene
retro_shar_455,
Taeniopygia guttata ENSTGUG00000017533 ortholog_one2one 1 retrogene
retro_tgut_11,
Tetraodon nigroviridis ENSTNIG00000015041 ortholog_one2many 1 retrogene
retro_tnig_2,
Xenopus tropicalis ENSXETG00000006898 ortholog_one2one 1 retrogene
retro_xtro_15,
Xiphophorus maculatus ENSXMAG00000008103 ortholog_one2one 1 retrogene
retro_xmac_13,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1657 92.45 82.38
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_2027 83.33 67.88
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000013657 retrocopies