Parental gene:

DDX6, ENSCJAG00000013591

Aliases:None
Description:DEAD (Asp-Glu-Ala-Asp) box helicase 6 [Source:HGNC Symbol;Acc:2747]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:16342308..16398120(-)


>ENSCJAG00000013591
ATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTGTCCAGTCAAAATGGTCAGCTGAGGGGCCCTGTGAAACC
CAGTGGTGGCCCTGGAGGTGGGGGCACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATG
GCACTCAGCAGCAAGCACAGAGTATGACCACCACTATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCA
AAGGATCTAAGAATCAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAAAGGGAGTT
ACTGATGGGAATTTTTGAAATGGGCTGGGAAAAGCCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTA
GGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAGAGCGGTGCCTACCTCATTCCCTTACTTGAACGGCTAGACCTG
AAGAAGGACAATATACAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGT
CAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACCGGAGGAACCAATTTACGAGATGACATAATGAGGCTTGATG
ATACAGTGCACGTGGTGATTGCTACCCCTGGGAGAATCCTGGATCTTATTAAGAAAGGAGTAGCAAAGGTTGATCATGTC
CAGATGATAGTATTGGATGAGGCAGATAAGTTGCTGTCACAGGATTTTGTGCAGATAATGGAGGATATTATTCTCACGCT
ACCTAAAAACAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAGAAGTTCATGAATTCCCATTTACAGA
AACCCTATGAGATTAACCTGATGGAGGAACTAACTCTGAAGGGAGTAACCCAGTACTACGCATATGTAACTGAGCGCCAA
AAAGTACACTGCCTCAACACACTTTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGTAACTCCTCTCAGCGAGT
TGAATTGCTAGCCAAGAAGATTTCTCAACTGGGTTATTCTTGCTTCTATATTCATGCTAAAATGAGGCAGGAACATCGAA
ATCGTGTATTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATA
CAAGCTGTGAATGTGGTAATAAACTTTGATTTCCCAAAGCTGGCAGAGACCTATCTCCATCGTATTGGAAGATCAGGTCG
CTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAAAGTATTGAGGAGCAGCTGG
GAACAGAAATTAAACCTATTCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGCGAGCCTGTAGAAGAT
GAGAAACCTTAA

Library Parental gene expression (RPM)
SRP051959_colon 114 .62 RPM
SRP051959_heart 133 .48 RPM
SRP051959_kidney 119 .43 RPM
SRP051959_liver 69 .05 RPM
SRP051959_lung 187 .12 RPM
SRP051959_lymph_node 197 .43 RPM
SRP051959_skeletal_muscle 126 .99 RPM
SRP051959_spleen 158 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000012442 ortholog_one2one 1 retrogene
retro_cfam_1347,
Gorilla gorilla ENSGGOG00000016751 ortholog_one2one 1 retrogene
retro_ggor_955,
Macaca mulatta ENSMMUG00000018651 ortholog_one2one 2 retrogenes
retro_mmul_1300, retro_mmul_1826,
Mus musculus ENSMUSG00000032097 ortholog_one2one 1 retrogene
retro_mmus_1896,
Nomascus leucogenys ENSNLEG00000007372 ortholog_one2one 1 retrogene
retro_nleu_695,
Otolemur garnettii ENSOGAG00000007978 ortholog_one2one 1 retrogene
retro_ogar_2861,
Pongo abelii ENSPPYG00000003942 ortholog_one2one 2 retrogenes
retro_pabe_1018, retro_pabe_2941,
Pan troglodytes ENSPTRG00000004353 ortholog_one2one 2 retrogenes
retro_ptro_2424, retro_ptro_838,
Rattus norvegicus ENSRNOG00000012453 ortholog_one2one 4 retrogenes
retro_rnor_2546, retro_rnor_2613, retro_rnor_900, retro_rnor_901,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_379 79.07 79.09
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2. retro_cjac_1427 88.59 54.45
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3. retro_cjac_1924 91.78 62.53
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Download FASTA sequences of all ENSCJAG00000013591 retrocopies