Parental gene:

ENSCAFG00000030220

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:21:39397345..39409338(+)


>ENSCAFG00000030220
ATGAGCGCTGCCAGGGAGTCCCATCCGCACGGGGTGAAGCGTTCGGCCTCCCCAGACGACGATCTTGGATCTAGCAATTG
GGAAGCAGCAGACTTAGGTAATGAAGAAAGAAAACAGAAGTTCTTGAGACTTATGGGTGCAGGAAAGAAAGAACATACTG
GCCGTCTTGTTATAGGAGACCACAAATCAACATCTCACTTCCGAACAGGGGAAGAAGACAAGAAAATTAATGAAGAACTG
GAGTCTCAATATCAGCAAAGTATGGACAGTAAATTATCAGGAAGATATCGACGACATTGTGGACTTGGCTTCAGTGAGGT
AGAAGATCATGATGGAGAAGGTGATGTGGCTGGAGATGATGATGATGATGATGATTCACCTGATCCTGAAAGTCCAGATG
ACTCTGAAAGTGATTCAGAGTCAGAGAAAGAAGAGTCTGCTGAAGAACTCCAAGCTACTGAGCACCCTGATGAAGTGGAG
GATCCCAAAAACAAAAAAGATGCAAAAAGCAACTATAAAATGATGTTTGTTAAATCCAGTGGTTCATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 76 .94 RPM
SRP017611_brain 38 .51 RPM
SRP017611_kidney 93 .64 RPM
SRP017611_liver 24 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009626 ortholog_one2many 1 retrogene
retro_cjac_3098,
Cavia porcellus ENSCPOG00000009679 ortholog_one2many 2 retrogenes
retro_cpor_1331, retro_cpor_772,
Equus caballus ENSECAG00000011778 ortholog_one2many 1 retrogene
retro_ecab_269,
Felis catus ENSFCAG00000027747 ortholog_one2many 1 retrogene
retro_fcat_2016,
Homo sapiens ENSG00000110696 ortholog_one2many 2 retrogenes
retro_hsap_1408, retro_hsap_3898,
Macropus eugenii ENSMEUG00000011795 ortholog_one2many 1 retrogene
retro_meug_1432,
Myotis lucifugus ENSMLUG00000001589 ortholog_one2many 1 retrogene
retro_mluc_2604,
Monodelphis domestica ENSMODG00000007147 ortholog_one2many 2 retrogenes
retro_mdom_1249, retro_mdom_672,
Mus musculus ENSMUSG00000030663 ortholog_one2many 2 retrogenes
retro_mmus_2190, retro_mmus_2616,
Nomascus leucogenys ENSNLEG00000017719 ortholog_one2many 1 retrogene
retro_nleu_1425,
Otolemur garnettii ENSOGAG00000025335 ortholog_one2many 2 retrogenes
retro_ogar_1613, retro_ogar_2569,
Ochotona princeps ENSOPRG00000000154 ortholog_one2many 1 retrogene
retro_opri_761,
Pongo abelii ENSPPYG00000003458 ortholog_one2many 2 retrogenes
retro_pabe_1166, retro_pabe_3178,
Rattus norvegicus ENSRNOG00000020436 ortholog_one2many 1 retrogene
retro_rnor_622,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_160 86.96 96.70
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2. retro_cfam_717 89.01 100.00
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Download FASTA sequences of all ENSCAFG00000030220 retrocopies